Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F02
         (142 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0076 + 40914237-40914315,40914415-40914677                       26   3.7  
01_01_0093 + 727977-729854,729877-729930                               26   3.7  
06_03_1067 - 27326167-27326295,27326572-27326656,27326993-273270...    25   8.4  

>01_07_0076 + 40914237-40914315,40914415-40914677
          Length = 113

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -1

Query: 76  QNKKRAYGHCSVVCYHERYT-KYC 8
           + K R   +C+++C HE YT  YC
Sbjct: 41  RGKCRGNRNCAMICVHEEYTGGYC 64


>01_01_0093 + 727977-729854,729877-729930
          Length = 643

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -1

Query: 97  SNTYDHCQNKKRAYGHCSVVCYHERYTKYC 8
           +N    C  + RA+G C+  C   +  KYC
Sbjct: 164 ANVTAQCPGELRAHGGCNSACRVFKQDKYC 193


>06_03_1067 -
           27326167-27326295,27326572-27326656,27326993-27327033,
           27327274-27327333,27327843-27327962,27328842-27329114,
           27329186-27329257,27329798-27329860,27329957-27330139,
           27330544-27330660,27330734-27332683,27332770-27332907,
           27333003-27333284,27334650-27335522
          Length = 1461

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 49  NGRTRASYFGNGRMYWT 99
           +GR    YFG G MYW+
Sbjct: 798 SGRDINQYFGGGVMYWS 814


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,843,342
Number of Sequences: 37544
Number of extensions: 51889
Number of successful extensions: 119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 14,793,348
effective HSP length: 27
effective length of database: 13,779,660
effective search space used: 261813540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)