Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F02
         (142 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical pr...    25   7.3  
AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical...    25   7.3  
AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical ...    25   9.7  

>Z49908-5|CAA90096.1|  353|Caenorhabditis elegans Hypothetical
           protein C07E3.5 protein.
          Length = 353

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 22  IVRGNIQLNNGRTRASYFGNGRMY 93
           I R NI+L + + R  YF   RMY
Sbjct: 219 IHRKNIRLTDDQVREEYFNRQRMY 242


>AC024859-18|AAK29974.1|  121|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.5 protein.
          Length = 121

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 8/25 (32%), Positives = 12/25 (48%)
 Frame = -2

Query: 132 HDKFSRDLLWTCPIHTTIAKIRSAR 58
           H+   +DLLW  P      ++R  R
Sbjct: 40  HESVKKDLLWAAPYDARFPQVRKQR 64


>AL132949-1|CAB61068.2|  463|Caenorhabditis elegans Hypothetical
           protein Y53F4B.1 protein.
          Length = 463

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/26 (30%), Positives = 14/26 (53%)
 Frame = -1

Query: 85  DHCQNKKRAYGHCSVVCYHERYTKYC 8
           ++C+N  R YG C  + +     +YC
Sbjct: 75  NNCENVVRIYGICETLPFRGMIMEYC 100


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,381,897
Number of Sequences: 27780
Number of extensions: 46872
Number of successful extensions: 118
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)