Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F02
         (142 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   0.19 
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    20   2.3  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    19   5.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    19   5.4  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    19   7.2  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    19   7.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    18   9.5  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 0.19
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 58  YGHCSVVCYHERYTKYC 8
           Y + SV  Y++ YTK+C
Sbjct: 438 YPNASVTPYNKNYTKFC 454


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = -2

Query: 126 KFSRDLLWTCPIHTT 82
           +F RDL+WT  ++ +
Sbjct: 91  QFVRDLIWTPTVYVS 105


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 38  YN*TMAVRALLILAMVVCIGHV 103
           Y+ ++ V A  IL   +C GHV
Sbjct: 770 YDSSVDVYAFGILFWYLCAGHV 791


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 38  YN*TMAVRALLILAMVVCIGHV 103
           Y+ ++ V A  IL   +C GHV
Sbjct: 808 YDSSVDVYAFGILFWYLCAGHV 829


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 5/14 (35%), Positives = 7/14 (50%)
 Frame = +3

Query: 36  HTTEQWPYARFLFW 77
           H   +W    FL+W
Sbjct: 326 HEMSEWVKVVFLYW 339


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -2

Query: 126 KFSRDLLWTCPIHTTIAKIRSARTAIVQLYVTTNDTLNTA 7
           K  +D++   P  +T    +S  T     Y+TTN+T N +
Sbjct: 700 KKDKDIILNVPKEST----QSLTTTGNVSYLTTNNTSNNS 735


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = -1

Query: 109 TMDVSNTYDHCQNKKRAY 56
           T+  +N Y++  NKK  Y
Sbjct: 311 TIHNNNNYNNYNNKKLYY 328


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,279
Number of Sequences: 438
Number of extensions: 567
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used:  2555823
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)