Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F01
         (377 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    23   1.3  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    20   7.2  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    20   9.5  
DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory pro...    20   9.5  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -2

Query: 118 AGACC*VQPLKYFKIG 71
           +GA C +QPL+  KIG
Sbjct: 555 SGAFCKMQPLRTLKIG 570


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 304 VRRQAVDVSRMYVVLTRLSGYCAQEHVRLH 215
           +R +  +++   +  T L+G   +EH  LH
Sbjct: 187 IRNKISNLNTSLIHSTHLNGDIVKEHQNLH 216


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +3

Query: 177 ISDTFGYCFDVSKCSLTC 230
           I D F YC D     +TC
Sbjct: 121 ICDKFYYCVDGKYNMITC 138


>DQ855497-1|ABH88184.1|  127|Tribolium castaneum chemosensory
           protein 11 protein.
          Length = 127

 Score = 19.8 bits (39), Expect = 9.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +1

Query: 304 LYQHDRSWWSLL 339
           L  H R WW+ L
Sbjct: 93  LIDHKRDWWNEL 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,040
Number of Sequences: 336
Number of extensions: 1535
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  7803226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)