Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F01
         (377 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha...    83   2e-17
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p...    83   2e-17
SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces po...    25   3.9  
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo...    25   5.2  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    24   6.9  
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc...    24   9.1  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    24   9.1  

>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 203

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 48/53 (90%)
 Frame = -1

Query: 281 VPHVRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKR 123
           V  +RRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKK+
Sbjct: 140 VSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKK 192



 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -2

Query: 376 QVLVTAISNSGPREDSTRIGRAGTVRRQAVDVS 278
           QVLV A++  GPREDSTRIG AGTVRRQAVDVS
Sbjct: 109 QVLVDAVAACGPREDSTRIGSAGTVRRQAVDVS 141



 Score = 28.3 bits (60), Expect = 0.42
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -3

Query: 132 QEKDELERVAKSNR 91
           ++KDELERVAKSNR
Sbjct: 190 KKKDELERVAKSNR 203


>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 82.6 bits (195), Expect = 2e-17
 Identities = 38/53 (71%), Positives = 48/53 (90%)
 Frame = -1

Query: 281 VPHVRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKR 123
           V  +RRVNQA+ L+  GAREAAFRN+K+I+EC+A+E+INAAKGSSNSYAIKK+
Sbjct: 140 VSPLRRVNQALALITIGAREAAFRNVKSISECLAEEIINAAKGSSNSYAIKKK 192



 Score = 56.0 bits (129), Expect = 2e-09
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -2

Query: 376 QVLVTAISNSGPREDSTRIGRAGTVRRQAVDVS 278
           QVLV A++  GPREDSTRIG AGTVRRQAVDVS
Sbjct: 109 QVLVDAVAACGPREDSTRIGSAGTVRRQAVDVS 141



 Score = 28.3 bits (60), Expect = 0.42
 Identities = 12/14 (85%), Positives = 14/14 (100%)
 Frame = -3

Query: 132 QEKDELERVAKSNR 91
           ++KDELERVAKSNR
Sbjct: 190 KKKDELERVAKSNR 203


>SPBC336.01 |fbh1|fdh1, fdh|DNA helicase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -2

Query: 343 PREDSTRIGRAGTVRRQAVDVSRMYVVLTR 254
           P+ DS    R G+ R    +++ +YV LTR
Sbjct: 737 PKFDSVSFSRIGSSRYLQEEINILYVALTR 766


>SPAPB8E5.07c |||ribosome biogenesis protein
           Rrp12|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1163

 Score = 24.6 bits (51), Expect = 5.2
 Identities = 9/42 (21%), Positives = 23/42 (54%)
 Frame = +1

Query: 157 LAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRTCGT 282
           LA +++++ T+  ++L +LN   +  +  +  +W    +C T
Sbjct: 99  LAPVVNNAETNKTVLLPYLNVLEKLLLLQDYSSWTHGNSCKT 140


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 227 REAAFRNIKTIAECVADELINAAKGSSNS 141
           R+ A+RN KT+A+  A   +N    + N+
Sbjct: 261 RDVAYRNAKTVAKWQAYGFMNGVLNTDNT 289


>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 431

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 20/62 (32%), Positives = 29/62 (46%)
 Frame = +1

Query: 121 ILFLMAYELDEPLAALISSSATHSAIVLMFLNAASRAPVHNNQIAWLTRRTCGTHRRLDV 300
           +++L A E D   A   + + TH+A + M L  A  A   NNQ  W   R CG    + +
Sbjct: 161 VVYLSAKEHDRITAD--TQAVTHAAFLTMGL--AWHA---NNQYPWEINRWCGGIENIKM 213

Query: 301 EL 306
            L
Sbjct: 214 NL 215


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 12/36 (33%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 337 EDSTRIGRAGTVRRQAVDV-SRMYVVLTRLSGYCAQ 233
           +++ RI RAG   RQA D  ++ + VL+  + Y  +
Sbjct: 637 QENIRIRRAGFAYRQAFDTFAQRFAVLSGKTSYAGE 672


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,358,802
Number of Sequences: 5004
Number of extensions: 23892
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)