Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_F01
(377 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0317 - 16328558-16328612,16328698-16328901,16329794-163300... 93 9e-20
01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419 93 9e-20
01_06_1477 + 37645143-37647425 31 0.40
01_07_0219 + 42079095-42079399,42079584-42079728,42081695-420817... 29 0.92
01_05_0512 - 22852009-22852140,22852686-22852820,22853739-228537... 29 1.2
07_01_0705 - 5313315-5315219,5315858-5315860 28 2.8
01_05_0213 - 19355785-19356522 27 4.9
08_01_0294 + 2376552-2376935,2377359-2377548,2377782-2377921,237... 27 6.5
06_01_1096 - 8988463-8989167,8989335-8989361,8989560-8989648,898... 26 8.6
>11_04_0317 -
16328558-16328612,16328698-16328901,16329794-16330065,
16330152-16330220
Length = 199
Score = 92.7 bits (220), Expect = 9e-20
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -1
Query: 272 VRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKR 123
+RRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKK+
Sbjct: 139 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK 188
Score = 56.0 bits (129), Expect = 9e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -2
Query: 376 QVLVTAISNSGPREDSTRIGRAGTVRRQAVDVS 278
QV+V AI NSGPRED+TRIG AG VRRQAVD+S
Sbjct: 105 QVIVDAIINSGPREDATRIGSAGAVRRQAVDIS 137
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -3
Query: 132 QEKDELERVAKSNR 91
++KDE+ERVAK+NR
Sbjct: 186 KKKDEIERVAKANR 199
>01_01_0006 + 26221-26292,26370-26641,27090-27293,27365-27419
Length = 200
Score = 92.7 bits (220), Expect = 9e-20
Identities = 44/50 (88%), Positives = 49/50 (98%)
Frame = -1
Query: 272 VRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKR 123
+RRVNQAI+LL TGARE+AFRNIKTIAEC+ADELINAAKGSSNSYAIKK+
Sbjct: 140 LRRVNQAIYLLTTGARESAFRNIKTIAECLADELINAAKGSSNSYAIKKK 189
Score = 56.0 bits (129), Expect = 9e-09
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = -2
Query: 376 QVLVTAISNSGPREDSTRIGRAGTVRRQAVDVS 278
QV+V AI NSGPRED+TRIG AG VRRQAVD+S
Sbjct: 106 QVIVDAIINSGPREDATRIGSAGAVRRQAVDIS 138
Score = 26.2 bits (55), Expect = 8.6
Identities = 10/14 (71%), Positives = 14/14 (100%)
Frame = -3
Query: 132 QEKDELERVAKSNR 91
++KDE+ERVAK+NR
Sbjct: 187 KKKDEIERVAKANR 200
>01_06_1477 + 37645143-37647425
Length = 760
Score = 30.7 bits (66), Expect = 0.40
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = -2
Query: 313 AGTVRRQAVDVSRMYVVLTRLSGYCAQEHVRLHLETSKQ*PNVSLMNLSMLPRAHLTHTP 134
A T+R A +YV +SG+ A+ H S+ +S + + R THTP
Sbjct: 54 AATLRAAAPGARMIYVYRNAMSGFAARLSAEQHARLSRSPGFLSSYLDAPVTRRDTTHTP 113
Query: 133 SRKG*AGA 110
G +GA
Sbjct: 114 EFLGVSGA 121
>01_07_0219 +
42079095-42079399,42079584-42079728,42081695-42081739,
42082150-42082265,42082913-42083012,42083103-42083138,
42083301-42083351,42083431-42083565
Length = 310
Score = 29.5 bits (63), Expect = 0.92
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = -1
Query: 275 HVRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGSSNSYAIKKRMSWSVLLS 99
HVRR+ A WL GAR A R A E++ +A G S ++ ++ + +++
Sbjct: 17 HVRRIEAAAWL---GARRATRREDAAARCAAAGEVVGSAAGVGRSAGMEVAIATAAVVA 72
>01_05_0512 -
22852009-22852140,22852686-22852820,22853739-22853787,
22854043-22854128,22854211-22854291,22854394-22854496,
22854577-22854684,22854799-22854919,22855532-22855712
Length = 331
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 311 WYSSTSSRRCVPHVRRVNQAIWLLCTGAREAAFRNIKTIAECVADELINAAKGS 150
+Y R C+ ++ + A++ RE RN+ I+ECVA N S
Sbjct: 273 FYEEEVRRLCLSFEQQFHYAVFFAYIRLREQEIRNLMWISECVAQNQKNRVHDS 326
>07_01_0705 - 5313315-5315219,5315858-5315860
Length = 635
Score = 27.9 bits (59), Expect = 2.8
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = +2
Query: 311 STTDPGGVFSWTRITNSS 364
S T PGGV WTR+ NS+
Sbjct: 96 SYTSPGGVEVWTRVCNST 113
>01_05_0213 - 19355785-19356522
Length = 245
Score = 27.1 bits (57), Expect = 4.9
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +2
Query: 254 PG*HDVHAGHIDGLTSNCTSTTDPGGVFSWTRITNSS 364
P HD HA H T++CT T+ GG +S+T IT+++
Sbjct: 50 PAYHDDHADHT---TNSCTFTS-AGGAYSYT-ITSAN 81
>08_01_0294 +
2376552-2376935,2377359-2377548,2377782-2377921,
2378101-2378168,2378289-2378391,2378668-2378817
Length = 344
Score = 26.6 bits (56), Expect = 6.5
Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Frame = +1
Query: 82 SILTVGLSNTLQLILFLMAYELDEPLAALISSSATHSAIV----LMFLNAASRAPVHNNQ 249
S+ VGL + ++ + ++ + +AA+ TH +V + AA+ V +Q
Sbjct: 36 SLFAVGLLSIGATVVVMRRFDAGDAVAAIGRYKVTHMPLVPPIMAAMVRAAAAGGVPPSQ 95
Query: 250 IAWLTRRTCG 279
+A L + +CG
Sbjct: 96 VASLVQVSCG 105
>06_01_1096 -
8988463-8989167,8989335-8989361,8989560-8989648,
8989830-8990039,8990877-8991047,8991595-8991777,
8991886-8991969,8992067-8992178
Length = 526
Score = 26.2 bits (55), Expect = 8.6
Identities = 9/11 (81%), Positives = 9/11 (81%)
Frame = +3
Query: 84 YFNGWT*QHAP 116
YFNGW QHAP
Sbjct: 424 YFNGWDMQHAP 434
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,062,868
Number of Sequences: 37544
Number of extensions: 166973
Number of successful extensions: 404
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 404
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 612769692
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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