Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_F01
         (377 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   3.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   6.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   8.4  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.4 bits (43), Expect = 3.6
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 88  LTVGLSNTLQLILFLMAYELDEPLAALISSSATHSAIVLMFLNAAS 225
           +T+G+S  L L++FL+      P  +L+        +    +N  S
Sbjct: 265 VTLGISILLSLVVFLLLVSKILPPTSLVLPLIAKYLLFTFIMNTVS 310


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 6.4
 Identities = 7/27 (25%), Positives = 13/27 (48%)
 Frame = +1

Query: 238 HNNQIAWLTRRTCGTHRRLDVELYQHD 318
           H  ++ WL+     +   +DVE +  D
Sbjct: 115 HTGEVVWLSHGIFRSSCDIDVEFFPFD 141


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 8.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 295 DVELYQHDRSWWSLLL 342
           DV+      SWW+L+L
Sbjct: 178 DVDEKTDANSWWALIL 193


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,844
Number of Sequences: 438
Number of extensions: 1695
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9176370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)