Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E22
(444 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 29 0.42
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 29 0.42
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar... 27 1.7
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 26 2.3
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 26 3.0
SPBC21H7.02 |taf10||transcription factor TFIID complex subunit T... 25 4.0
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 25 5.2
SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid transporter|Schizo... 25 5.2
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 25 6.9
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 25 6.9
SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces pomb... 24 9.1
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 24 9.1
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 24 9.1
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 28.7 bits (61), Expect = 0.42
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = +2
Query: 56 LGLTTPNGGSSRPRTPTGLLTPSGRQRTPS 145
+G+TT +G S PRTP G TP PS
Sbjct: 136 VGMTTRSGRQS-PRTPIGSTTPKSSHSPPS 164
Score = 28.3 bits (60), Expect = 0.56
Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +2
Query: 107 GLLTPSGRQ--RTPSGSTTPVRS 169
G+ T SGRQ RTP GSTTP S
Sbjct: 137 GMTTRSGRQSPRTPIGSTTPKSS 159
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 28.7 bits (61), Expect = 0.42
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 375 CVCRYYLPQVGNKTF 331
CV YYLP++G KTF
Sbjct: 495 CVVYYYLPKIGGKTF 509
>SPCC1235.09 |||histone deacetylase complex
subunit|Schizosaccharomyces pombe|chr 3|||Manual
Length = 564
Score = 26.6 bits (56), Expect = 1.7
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -2
Query: 206 ASLAIWTRQSVDLNALASYCLTVSFACH*VSGVRW 102
AS++I Q+ D A YCL SF ++GV W
Sbjct: 239 ASVSICEEQN-DFKAKTDYCLQSSFDNQDITGVAW 272
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 26.2 bits (55), Expect = 2.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 375 CVCRYYLPQVGNKTF 331
CV YYLP+ G KTF
Sbjct: 494 CVGYYYLPKYGGKTF 508
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1389
Score = 25.8 bits (54), Expect = 3.0
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 124 WQAKDTVRQYDASAFRSTDCRVQIAKEAFGRVRGRNPHDPWS-PTRDSLVTNNGET 288
W A + + F +TD + A A R G NP D ++ + SL+ + GET
Sbjct: 1038 WYADTMLHAVNTEDFVTTDGDIWSATYAIKRYLGENPTDTFAYYIKASLLEHLGET 1093
>SPBC21H7.02 |taf10||transcription factor TFIID complex subunit
Taf10 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 4.0
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = -1
Query: 171 PERTGVVLPDGVLCLPLGVRSPVGVRGRDDP 79
PE + LP G P+ V SP + D P
Sbjct: 33 PETSSTNLPTGDNLAPMSVESPAHLNNEDSP 63
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +1
Query: 304 VNEKKKLYAECFISNLWEIISTYAMQVALKLSISKFSLYNT 426
V++K+ L +CFI + + T + + L + SL+NT
Sbjct: 352 VSDKEYLRIQCFIQSCLQYRLTQDEKYLIDLDVKVCSLFNT 392
>SPBC1652.02 |aap1|SPBC16A3.20c|APC amino acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 594
Score = 25.0 bits (52), Expect = 5.2
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Frame = -2
Query: 395 SFKATC-IAYVDIISHKLEIKHSAYNFFFSFT-----IGTARVSPLFV 270
+F A C + Y+ I E K SAY FF SF I +SP+FV
Sbjct: 473 NFLALCALVYISIFPVTHE-KPSAYGFFVSFLGPSVFIAYLLISPIFV 519
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = +2
Query: 131 QRTPSGSTTPVRS 169
QRTPSGS TP+ S
Sbjct: 354 QRTPSGSLTPLSS 366
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 24.6 bits (51), Expect = 6.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 21 HRRHEPLQMLVSLASRHPT 77
HRRHEP + +S RH T
Sbjct: 152 HRRHEPYRTHLSRHHRHST 170
>SPBC3H7.14 |mug176||BRCT domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 406
Score = 24.2 bits (50), Expect = 9.1
Identities = 7/10 (70%), Positives = 9/10 (90%)
Frame = +1
Query: 226 RNPHDPWSPT 255
+NPHD W+PT
Sbjct: 125 KNPHDLWNPT 134
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 24.2 bits (50), Expect = 9.1
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +2
Query: 62 LTTPNG--GSSRPRTPTGLLTPSGRQRTPSGST 154
+ TPN G S PRT +G+ QRTP S+
Sbjct: 132 IATPNTTIGVSTPRTDSGIDDIELTQRTPPSSS 164
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 24.2 bits (50), Expect = 9.1
Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = -2
Query: 428 HVLYKENFD-MESFKATCIAYVDIISHKLEIKHSAYN 321
H L ++ F+ ++ + C A +D + KLE+ AYN
Sbjct: 293 HQLLEKKFEILKRERNECNAKIDELQDKLELLTDAYN 329
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,726,922
Number of Sequences: 5004
Number of extensions: 31559
Number of successful extensions: 98
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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