Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E22
(444 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0171 - 7427862-7428293 34 0.059
04_04_0748 + 27738155-27740290 29 1.3
07_03_1559 + 27727492-27728193 29 2.2
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 29 2.2
02_01_0353 + 2545982-2549833 29 2.2
03_04_0011 + 16398093-16398170,16401321-16401806,16401892-164023... 28 2.9
07_03_1483 + 26881032-26882035,26882130-26882204,26882324-268828... 28 3.9
01_07_0045 - 40706873-40706956,40707083-40707253,40707585-407078... 28 3.9
01_06_0565 + 30287253-30287502,30287522-30289010,30289133-302892... 28 3.9
11_06_0682 - 26253319-26253575,26254009-26254114 27 5.1
10_02_0046 + 4533959-4533988,4534061-4534136,4534225-4535111,454... 27 5.1
06_02_0283 + 13726047-13726090,13726160-13726266,13726515-137266... 27 5.1
04_04_1048 + 30411344-30411699,30411756-30411895,30412631-304126... 27 5.1
03_05_0890 - 28547462-28547545,28548451-28548528,28548641-285488... 27 5.1
11_03_0021 + 9010846-9011672,9011753-9013700 27 6.8
09_01_0133 - 1998528-1998566,1998672-1998710,1998796-1998946,199... 27 6.8
03_05_0932 + 28924891-28924935,28925982-28926062,28926464-289265... 27 6.8
11_04_0068 - 13116037-13116414,13116501-13116947,13117026-131177... 27 9.0
11_03_0023 - 9029976-9029981,9030115-9030197,9030274-9030763 27 9.0
06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874 27 9.0
04_04_1694 - 35419278-35419565,35419744-35419861,35420404-354204... 27 9.0
>02_02_0171 - 7427862-7428293
Length = 143
Score = 33.9 bits (74), Expect = 0.059
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = +2
Query: 71 PNGGSSRPRTPTGLLTPSGRQRTPSGSTTPVRSGQQ 178
P GGS R R TP GR+ +PS S TP + Q+
Sbjct: 36 PTGGSPRRRRRRSCTTPGGRRPSPSTSATPSVTNQR 71
>04_04_0748 + 27738155-27740290
Length = 711
Score = 29.5 bits (63), Expect = 1.3
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +2
Query: 62 LTTPNGGSSRPRTPTGLLTPSGRQRTPSGSTTPVRSG 172
LT+ +G +S+ + GLL+P + P +T P +G
Sbjct: 202 LTSSSGSNSKATSAFGLLSPEAALQPPPATTAPFHNG 238
>07_03_1559 + 27727492-27728193
Length = 233
Score = 28.7 bits (61), Expect = 2.2
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 151 YDASAFRSTDCRVQIAKEAFGRVRGRNPHDPWSPTRDSLVTNNGETRAVPIV 306
+ A+A ST + ++ G RGR PWSP +++ NG R V +V
Sbjct: 166 HGAAALCSTPELRKHYEQLVGAARGR----PWSPRLETIKERNGRRRVVDVV 213
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 68 TPNGG-SSRPRTPTGLLTPSGRQRTPSGSTTPVRSGQQT 181
TP+G + P+ P GL+TP+ +++ TP G T
Sbjct: 255 TPSGAWDATPKLPGGLVTPTPKKQRSRWDETPASMGSAT 293
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.7 bits (61), Expect = 2.2
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 68 TPNGG-SSRPRTPTGLLTPSGRQRTPSGSTTPVRSGQQT 181
TP+G + P+ P GL+TP+ +++ TP G T
Sbjct: 279 TPSGAWDATPKLPGGLVTPTPKKQRSRWDETPASMGSAT 317
>03_04_0011 +
16398093-16398170,16401321-16401806,16401892-16402380,
16402810-16403466
Length = 569
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 247 SPTRDSLVTNNGETRAVPIVNEKKKLYAECFISN 348
+PTRD L++N G+ VPI + + K CF+ N
Sbjct: 175 TPTRDYLLSNKGD--RVPISDLEGKYVGLCFVVN 206
>07_03_1483 +
26881032-26882035,26882130-26882204,26882324-26882861,
26883999-26884895,26885178-26885327,26885459-26885791,
26886501-26886695,26887805-26887918
Length = 1101
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/53 (24%), Positives = 21/53 (39%)
Frame = +1
Query: 142 VRQYDASAFRSTDCRVQIAKEAFGRVRGRNPHDPWSPTRDSLVTNNGETRAVP 300
+ + D + T+C ++ K + G DPW P V GE +P
Sbjct: 282 IAEMDLAKLMPTECLMKCLKAIKKLLVGHPKRDPWPPPWSGGVVRGGEVWHIP 334
>01_07_0045 -
40706873-40706956,40707083-40707253,40707585-40707812,
40708414-40708423,40709108-40709553
Length = 312
Score = 27.9 bits (59), Expect = 3.9
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 62 LTTPNGGSSRPRTPTGLLTPSGRQRTPSGSTT-PVRSGQQTAVSRLLRK 205
LT P+ S P TPT L T GR + T+ P SGQQ V +R+
Sbjct: 188 LTGPSSASFHPSTPT-LQTFPGRVKEELCPTSFPSPSGQQATVEVRMRE 235
>01_06_0565 +
30287253-30287502,30287522-30289010,30289133-30289277,
30289679-30289729
Length = 644
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/37 (43%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Frame = +2
Query: 68 TPNGGSSRPRTPTGLLTPS--GRQRTPSGSTTPVRSG 172
+P+ GSSR TP G TP+ G PS T+P G
Sbjct: 289 SPSSGSSRT-TPGGCSTPTPCGTPPAPSSGTSPTTPG 324
>11_06_0682 - 26253319-26253575,26254009-26254114
Length = 120
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/25 (48%), Positives = 15/25 (60%)
Frame = +2
Query: 86 SRPRTPTGLLTPSGRQRTPSGSTTP 160
S P TPT +TPS T + +TTP
Sbjct: 51 SMPTTPTTPVTPSSSSPTTTATTTP 75
>10_02_0046 +
4533959-4533988,4534061-4534136,4534225-4535111,
4546711-4546746
Length = 342
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/71 (30%), Positives = 32/71 (45%)
Frame = +1
Query: 130 AKDTVRQYDASAFRSTDCRVQIAKEAFGRVRGRNPHDPWSPTRDSLVTNNGETRAVPIVN 309
A DT ++A ++ ++ K A R+ G PH P PT L NG+ AV
Sbjct: 249 ATDTGEAGGSAAAGTSGSADRVVKAA-ARLFGSPPHSP--PT-SPLAIQNGKKAAVETSA 304
Query: 310 EKKKLYAECFI 342
+ L A CF+
Sbjct: 305 SEYSLTAPCFV 315
>06_02_0283 +
13726047-13726090,13726160-13726266,13726515-13726621,
13726735-13726812,13734948-13735071,13735585-13735658,
13735742-13735801,13737561-13737670,13737806-13737965,
13738218-13738360,13738461-13738605,13738727-13738819,
13740070-13740186
Length = 453
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = +2
Query: 80 GSSRPRTPTGLLTPSGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDASEXXXXXXXXXXXX 259
GSS R+PT L+ + Q TP+ ST P + + LL + +
Sbjct: 22 GSSELRSPTLNLSIACPQLTPAASTFPAAASNYCQLDELLTEEEKDLQIKVRQFMENEVA 81
Query: 260 XXSSRTTEKRE-PFRL 304
S+ EK E PF L
Sbjct: 82 PIISKFWEKAEFPFHL 97
>04_04_1048 +
30411344-30411699,30411756-30411895,30412631-30412696,
30413177-30413328
Length = 237
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 3/41 (7%)
Frame = +2
Query: 62 LTTPNGGSSRPRTPTGLLTPSGRQ---RTPSGSTTPVRSGQ 175
LTT + S+RP P G + R P S +P+RSGQ
Sbjct: 27 LTTASSSSARPLRPRGGRAAGSVRCMARRPESSYSPLRSGQ 67
>03_05_0890 -
28547462-28547545,28548451-28548528,28548641-28548814,
28548902-28548958,28549065-28549116,28549907-28549995,
28550259-28550344,28550427-28550637,28551790-28551882,
28551958-28552098,28552175-28552267,28553879-28554113,
28554263-28554435,28555234-28556571,28556668-28556853,
28557625-28557713,28557756-28557905,28557951-28558596
Length = 1324
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 65 TTPNGGSSRPRTPTGLLTPSGRQRTPSGSTTPVRSGQQTAVSRLLRK 205
++P GS+ PRTPT +G S S++ RS ++ S RK
Sbjct: 18 SSPTDGSNSPRTPTSAPPAAGSPAAASSSSSS-RSDKKKPKSETPRK 63
>11_03_0021 + 9010846-9011672,9011753-9013700
Length = 924
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +1
Query: 316 KKLYAECFISNLWEIISTYAMQVALKLSIS 405
K+LY CFI +W + AMQ K ++
Sbjct: 830 KELYLLCFIPGMWPVFEPGAMQELQKYHLT 859
>09_01_0133 -
1998528-1998566,1998672-1998710,1998796-1998946,
1999185-1999337,1999416-2000302,2000390-2000836,
2000915-2001190,2001215-2001622
Length = 799
Score = 27.1 bits (57), Expect = 6.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = +2
Query: 62 LTTPNGGSSRPRTP-TGLLTPSGRQRTPSGSTTPVRSGQQTAVSR 193
++T GSSR RTP TG P R R + +R+ + +SR
Sbjct: 1 MSTTTSGSSRARTPRTGNKIPKERFRITAVDAVGLRTSPRKILSR 45
>03_05_0932 +
28924891-28924935,28925982-28926062,28926464-28926512,
28926599-28926677,28926762-28926921,28927307-28927440,
28927814-28927882,28928064-28928151,28928396-28928471,
28929267-28929340,28929478-28929585,28929858-28930160,
28930483-28930587,28930670-28930750,28930838-28931852,
28932086-28932201
Length = 860
Score = 27.1 bits (57), Expect = 6.8
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = -1
Query: 150 LPDGVLCLPLGVRSPVGVR 94
LPDG LC+P RS +R
Sbjct: 519 LPDGTLCMPTDTRSKPNIR 537
>11_04_0068 -
13116037-13116414,13116501-13116947,13117026-13117757,
13118235-13118348
Length = 556
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +2
Query: 62 LTTPNGGSSRPRTP-TGLLTPSGRQRTPSGSTTPVRSGQQTAVSR 193
++T GSSR RTP TG P R R + + + +G + +SR
Sbjct: 47 MSTTTSGSSRARTPRTGNKIPKERFRITTVNQVGLPTGPRKILSR 91
>11_03_0023 - 9029976-9029981,9030115-9030197,9030274-9030763
Length = 192
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +1
Query: 316 KKLYAECFISNLWEIISTYAMQVALKLSIS 405
K+LY CF+ +W + AMQ K ++
Sbjct: 83 KELYLLCFVPGIWPVFEPGAMQELQKYHLT 112
>06_03_0245 + 18654103-18654428,18654507-18654677,18654760-18654874
Length = 203
Score = 26.6 bits (56), Expect = 9.0
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = +2
Query: 62 LTTPNGGSSRPRTP-TGLLTPSGRQRTPSGSTTPVRSGQQTAVSR 193
++T GSSR RTP TG P R R S + + + +SR
Sbjct: 8 MSTTTSGSSRARTPRTGNKIPKERFRITSADAVGLPTSPKKILSR 52
>04_04_1694 -
35419278-35419565,35419744-35419861,35420404-35420490,
35420909-35420931,35421647-35421843,35421964-35422159,
35422382-35422481,35423288-35423374,35424053-35424282,
35424678-35424763,35425148-35425271,35425415-35428573,
35430014-35430019
Length = 1566
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 250 PTRDSLVTNNGETRAVPIVNEKKKL 324
P S T +G ++ +PI NE+KKL
Sbjct: 752 PENGSTPTESGSSKFIPIGNEEKKL 776
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,625,795
Number of Sequences: 37544
Number of extensions: 222859
Number of successful extensions: 712
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 712
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 847740284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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