Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E22
         (444 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        24   0.65 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        24   0.65 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        24   0.65 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   0.86 
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    23   1.1  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              22   3.5  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   3.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.5  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   6.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.0  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 305 TIGTARVSPLFVTRESRVGLQGSWGFRP 222
           T GT   S L+  R   + L GSW  RP
Sbjct: 651 THGTLAASTLYSKRPDLLHLFGSWSNRP 678


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 305 TIGTARVSPLFVTRESRVGLQGSWGFRP 222
           T GT   S L+  R   + L GSW  RP
Sbjct: 651 THGTLAASTLYSKRPDLLHLFGSWSNRP 678


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 24.2 bits (50), Expect = 0.65
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 305 TIGTARVSPLFVTRESRVGLQGSWGFRP 222
           T GT   S L+  R   + L GSW  RP
Sbjct: 651 THGTLAASTLYSKRPDLLHLFGSWSNRP 678


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 0.86
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 247 SPTRDSLVTNNGETRAV 297
           SP+ D+L   NGETR +
Sbjct: 861 SPSNDALFVLNGETRTI 877


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 346 NLWEIISTYAMQVALKLSISKFSLYNTCL 432
           ++W+  STY  +V  K + SK  L NT L
Sbjct: 317 SIWDYDSTYIPKVKNKKAGSKHLLQNTWL 345


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 295 VPIVNEKKKLYAECFI 342
           + + NEK +L++EC I
Sbjct: 52  IDVENEKVQLFSECLI 67


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -2

Query: 146 LTVSFACH*VSGVRWVCVGVMTLRWV 69
           L +S     V  +RW   G + L W+
Sbjct: 160 LQISEGVEYVGNIRWELAGTLLLVWI 185


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +2

Query: 95  RTPTGLLTPSGRQRTPSGSTTPVRSGQQTAVSRLLRKPSDA 217
           R P   +TP  +  T   ST    + Q TA    L+  SDA
Sbjct: 437 RYPNASVTPYNKNYTKFCSTEKRLTKQNTAFENQLQFVSDA 477


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.0 bits (42), Expect = 6.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +1

Query: 295 VPIVNEKKKLYAECFISN 348
           + + ++K +LY EC + N
Sbjct: 52  IDVEDKKVQLYCECILKN 69


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/26 (23%), Positives = 12/26 (46%)
 Frame = -2

Query: 146 LTVSFACH*VSGVRWVCVGVMTLRWV 69
           L +S     +  +RW   G + + W+
Sbjct: 193 LQISDGIENIGSIRWELAGTLAVVWI 218


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/26 (23%), Positives = 12/26 (46%)
 Frame = -2

Query: 146 LTVSFACH*VSGVRWVCVGVMTLRWV 69
           L +S     +  +RW   G + + W+
Sbjct: 246 LQISDGIENIGSIRWELAGTLAVVWI 271


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,305
Number of Sequences: 438
Number of extensions: 2071
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)