Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E21
(473 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 119 2e-28
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 29 0.27
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 28 0.63
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.63
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ... 27 1.5
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha... 26 2.5
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch... 26 2.5
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 25 4.5
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 4.5
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 25 4.5
SPAPB8E5.03 |mae1||malic acid transport protein Mae1 |Schizosacc... 25 5.9
SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein Klp6|S... 25 5.9
SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|c... 25 7.8
SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces pom... 25 7.8
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 119 bits (287), Expect = 2e-28
Identities = 67/167 (40%), Positives = 96/167 (57%), Gaps = 16/167 (9%)
Frame = +1
Query: 19 YVERLKDEVRVSALIDRVCQVVERDGTPQEICRAYLRKIDHLYYK------FDPRAVRKD 180
Y++RLKDE + L+ R +ER G + R +R++D +YYK + +
Sbjct: 476 YIDRLKDETSLYTLLVRSQGYLERIGVVENTARLIMRRLDRVYYKPEQVIRANEEVAWRS 535
Query: 181 LPPGEETTIKK----------MERLCKYIYGHDETDRLRTRAILSHIYHHALHDNWFQAR 330
PP + TI + LC Y+Y + LRTRA+L HIYH AL + +++AR
Sbjct: 536 FPPTFDLTITPRATTTTPDILIHSLCVYLYNNG-VSLLRTRAMLCHIYHEALQNRFYKAR 594
Query: 331 DLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKEAHGCL 471
D+LLMSHLQ++V +D +TQIL+NRTM +GLCAFR G V+E L
Sbjct: 595 DMLLMSHLQDSVHAADIATQILHNRTMVQIGLCAFRNGMVQETQYAL 641
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 29.5 bits (63), Expect = 0.27
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +1
Query: 286 HIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQILYNRTMANLGLCAFRRGNVKE 456
++ ++ +DN F DLL++ L + + DP+ + NR + L F +G VK+
Sbjct: 912 YLKNYNFNDNQFLFMDLLIIFPLSAAMSYFDPAQNLTSNRPNSTL----FGKGRVKD 964
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 28.3 bits (60), Expect = 0.63
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +1
Query: 175 KDLPPGEETTIKKMERLCKYIYGHDETD 258
KD+PP RLC I HDETD
Sbjct: 42 KDVPPNLPRQPDSWLRLCSNIESHDETD 69
>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 575
Score = 28.3 bits (60), Expect = 0.63
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 295 DKCVTKWREFSIDRSHHDHKYIYKVF 218
DK + W+ S D ++DH+++ K F
Sbjct: 234 DKAIPSWKSRSSDSKYNDHQFVKKNF 259
>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1888
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +2
Query: 269 LAPFCHTFITMLYMTTGSKLAIYYSCLISKKLFSTLTQVHRFF 397
L FC + + Y+ GS A++YS L+ + L T R +
Sbjct: 1637 LRKFCVKELLLSYLGEGSLAAMFYSLLLLEGLSRTYNSFRRIY 1679
>SPBC1711.04 |||methylenetetrahydrofolate reductase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 2.5
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = +1
Query: 76 QVVERDGTPQEICRAYLRKIDHLYYKFDPRAVRKDLPPGEETTIKKM 216
QVV D + +C Y+ + H DP +K + P I K+
Sbjct: 114 QVVSPDKDVEGLCHKYVMNMYHNIRHLDPEKTKKSILPCTPLAIVKI 160
>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
3|||Manual
Length = 667
Score = 26.2 bits (55), Expect = 2.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +2
Query: 101 RKKSAAHIYARLITCITNSIHALC--VKTSLRAK 196
R S A+IY +++CIT S+ C +K+ L AK
Sbjct: 238 RNMSKANIYTTILSCITISLLIGCRNLKSKLSAK 271
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.4 bits (53), Expect = 4.5
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +1
Query: 4 EAARGYVERLKDEVRVSALIDRVC-QVVERDGTPQEICRAYLRKIDHLYYKFDPRAVRKD 180
E GY + V S I R+ Q R +P C + KI+ YY +P A+R
Sbjct: 807 ERLLGYSNEAQRFVGGSICISRLAPQDYHRFHSPVNGCIGPITKIEGQYYTVNPMAIRSY 866
Query: 181 L 183
L
Sbjct: 867 L 867
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 4.5
Identities = 8/13 (61%), Positives = 11/13 (84%)
Frame = +1
Query: 280 LSHIYHHALHDNW 318
LS ++HHAL+D W
Sbjct: 919 LSIVWHHALYDGW 931
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.4 bits (53), Expect = 4.5
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 110 SAAHIYARLITCITNSIHALCVKTSLRAKKQLSRKWKDFVNIFM 241
S+ HI +T T I V+ SL A ++ R +KDF N FM
Sbjct: 450 SSIHIKKLYVTPTTLRI----VEDSLEAGNRVIRNFKDFANRFM 489
>SPAPB8E5.03 |mae1||malic acid transport protein Mae1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 25.0 bits (52), Expect = 5.9
Identities = 8/28 (28%), Positives = 16/28 (57%)
Frame = +2
Query: 341 SCLISKKLFSTLTQVHRFFTTELWLIWV 424
+CL+S F + ++ + T W++WV
Sbjct: 110 TCLLSISTFIDMLAIYAYPDTGEWMVWV 137
>SPBC1685.15c |klp6|sot2, SPBC649.01c|kinesin-like protein
Klp6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.0 bits (52), Expect = 5.9
Identities = 11/39 (28%), Positives = 20/39 (51%)
Frame = +1
Query: 40 EVRVSALIDRVCQVVERDGTPQEICRAYLRKIDHLYYKF 156
E R++ L D+ + + P+EIC+ + I H+ F
Sbjct: 508 ETRLAKLYDQRSLITAKVN-PEEICKTFQNSISHIVSSF 545
>SPAC3H1.06c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 589
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +2
Query: 299 MLYMTTGSKLAIYYSCLISKKL-FSTLTQV 385
+L TGS +AIYY+ IS+ + F LT V
Sbjct: 426 VLLAGTGSMIAIYYNTDISRTMGFLALTAV 455
>SPCC965.12 |||dipeptidyl aminopeptidase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 416
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 250 ETDRLRTRAILSHIYHHALHDNWFQARDLLLMSH 351
E +RL LSH+ H +HD + ++ SH
Sbjct: 203 EMNRLGMMVDLSHVSHRTMHDALDVTKAPVIFSH 236
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,049,881
Number of Sequences: 5004
Number of extensions: 42469
Number of successful extensions: 127
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -