Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E21
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...   101   3e-22
02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,121...   101   3e-22
02_04_0371 + 22434710-22435102,22435428-22435624,22435707-224358...    27   5.8  
07_01_0118 + 898100-898233,898347-898779                               27   7.7  
05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158           27   7.7  

>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score =  101 bits (242), Expect = 3e-22
 Identities = 50/86 (58%), Positives = 62/86 (72%)
 Frame = +1

Query: 214 MERLCKYIYGHDETDRLRTRAILSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQI 393
           M+ L   IY + + +R + RA+L  IYHHA+ D +  ARDLLLMSHLQ+ VQ  D S+QI
Sbjct: 504 MDALMSVIYKYGD-ERTKARAMLCDIYHHAISDKFSVARDLLLMSHLQDGVQLMDISSQI 562

Query: 394 LYNRTMANLGLCAFRRGNVKEAHGCL 471
           L+NR MA LGLCAFR G + EAHGCL
Sbjct: 563 LFNRVMAQLGLCAFRAGLIIEAHGCL 588



 Score = 33.1 bits (72), Expect = 0.12
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = +1

Query: 1   DEAARGYVERLKDEVRVSALIDRVCQVVERDGTPQEICRAYLRKIDHLYYK 153
           D   + YV+RL+DE     +   V   +ER G  +   +  LR+++ +YYK
Sbjct: 391 DPYTKDYVQRLRDEPLFLVVAQNVQDYLERVGNFKAEAKVALRRVELVYYK 441


>02_01_0177 + 1214226-1214294,1214707-1214794,1216095-1216308,
            1216413-1216738,1216860-1217013,1217377-1217438,
            1218078-1218133,1219456-1221279,1221775-1222698,
            1222855-1222866
          Length = 1242

 Score =  101 bits (242), Expect = 3e-22
 Identities = 50/86 (58%), Positives = 62/86 (72%)
 Frame = +1

Query: 214  MERLCKYIYGHDETDRLRTRAILSHIYHHALHDNWFQARDLLLMSHLQETVQHSDPSTQI 393
            M+ L   IY + + +R + RA+L  IYHHA+ D +  ARDLLLMSHLQ+ VQ  D S+QI
Sbjct: 818  MDALMSVIYKYGD-ERTKARAMLCDIYHHAISDEFSVARDLLLMSHLQDGVQLMDISSQI 876

Query: 394  LYNRTMANLGLCAFRRGNVKEAHGCL 471
            L+NR MA LGLCAFR G + EAHGCL
Sbjct: 877  LFNRVMAQLGLCAFRAGLIIEAHGCL 902



 Score = 31.1 bits (67), Expect = 0.47
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +1

Query: 1   DEAARGYVERLKDEVRVSALIDRVCQVVERDGTPQEICRAYLRKIDHLYYK 153
           D   + YV+RL+DE     +   V   +E  G  +   +  LR+++ +YYK
Sbjct: 705 DPYTKDYVQRLRDEPLFLVVAQNVQDYLEHVGNFKAEAKVALRRVELVYYK 755


>02_04_0371 + 22434710-22435102,22435428-22435624,22435707-22435824,
            22436458-22436574,22436702-22436803,22437431-22437487,
            22437976-22438044,22438423-22438533,22438597-22438791,
            22439023-22439121,22439656-22440222,22440344-22440568,
            22441036-22441338,22441640-22441707,22441947-22442105,
            22442230-22442475,22442549-22442680,22443243-22443351,
            22444131-22444283,22444359-22444601,22444695-22444862,
            22445013-22445156,22445238-22445699,22446495-22446791,
            22446867-22447024,22447139-22447246,22447474-22447732
          Length = 1752

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 67   RVCQVVERDGTPQEICRAYLRKIDHLYYKFDPRAVRKDLPPGEETTIKKMERLCKY 234
            ++C +V+  GTP ++  A ++ +   +     +  R++ P  +   I+K+  +  Y
Sbjct: 1189 QICALVDSCGTPMDVTLAVVKLVAEGFTTVKLKVGRRENPAEDAAVIQKVREIVGY 1244


>07_01_0118 + 898100-898233,898347-898779
          Length = 188

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +2

Query: 56  HLLIASVKL*NVME-HRKKSAAHIYARLITCITNSIHALCVKTSLRAKKQLSR 211
           H  IASV +   ME  R    A+++ RL+   TN+++   V  SLR  K+  R
Sbjct: 92  HPEIASVAMELAMESERSFMVANVFGRLLRSNTNTLYWRLVLASLREFKKKIR 144


>05_03_0081 + 8249692-8249694,8249902-8250273,8250781-8251158
          Length = 250

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
 Frame = +1

Query: 130 KIDHLYYKFDPRAVRKDLPPGEETTIKKME-RLCKYIYG---HDETDRLRTR---AILSH 288
           K+D L  + + +   K++P G   T+K ++  +   +YG   H ETD L TR     +++
Sbjct: 149 KLDLLMNRLEDQ--EKNMPQG---TVKALDAHITCEVYGNSGHSETDCLETREEAVFMNN 203

Query: 289 IYHHALHDNWFQAR 330
            YH      W QAR
Sbjct: 204 GYHPQGGQGWNQAR 217


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,488,370
Number of Sequences: 37544
Number of extensions: 275733
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)