Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E20
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces pomb...    26   0.58 
SPBC8D2.19 |mde3||serine/threonine protein kinase Mde3|Schizosac...    24   3.1  
SPAP8A3.10 |||mitochondrial intermembrane space protein sorting ...    23   5.4  
SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit Ssr2|Schizosa...    23   7.1  

>SPAC31A2.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 542

 Score = 26.2 bits (55), Expect = 0.58
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 129 PNFSNPRNLFTFGINIFRQCFVNCNFN 49
           P+ S P N      N+FR+ F  CNF+
Sbjct: 245 PDNSLPPNFINNHSNVFRRSFHTCNFS 271


>SPBC8D2.19 |mde3||serine/threonine protein kinase
           Mde3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 559

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 150 LLIVEYLPNFSNPRNLFTFGINIFRQ 73
           L  ++YLP++  P N     IN F +
Sbjct: 441 LTSIDYLPSYKPPSNGSNIAINAFNE 466


>SPAP8A3.10 |||mitochondrial intermembrane space protein sorting
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 171

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = +2

Query: 56  LQFTKHCLKMLIPKVNKFRGLLKFGKYSTISK 151
           +Q +++C K ++  + KF   L+FG    + K
Sbjct: 112 IQSSENCSKTIVDTIAKFVSPLRFGLGRRVQK 143


>SPAC23H3.10 |ssr2||SWI/SNF and RSC complex subunit
           Ssr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 503

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = -3

Query: 72  CFVNCNFNY*QEVKTHSHDSQPSC 1
           C VNC+  +   +K   +D  P+C
Sbjct: 196 CGVNCSQTWYHNLKNKKYDICPNC 219


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 589,798
Number of Sequences: 5004
Number of extensions: 7917
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)