Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E20
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical p...    25   7.2  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    25   9.5  

>L10986-11|AAK93846.2|  203|Caenorhabditis elegans Hypothetical
           protein F10E9.10 protein.
          Length = 203

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 11/38 (28%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = -3

Query: 159 FRSLLIVEYLPNFSNPRNLFTFGI---NIFRQCFVNCN 55
           F +  +++   +F+NP N+F F I   ++ ++ +VNC+
Sbjct: 157 FYAFYMLQLRSHFNNPSNIFEFPIFFKSMNQKYYVNCD 194


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 20  WECVLTS-C**LKLQFTKHCLKMLIPKVNKFRGLLKFGKYSTISKLRN 160
           W+  + S C   K+QF   C +       KF G  KFGK+S  S  R+
Sbjct: 517 WQYKINSFCQIKKIQFFVVCGEYQKYTFTKFAGFGKFGKFSGHSCCRS 564


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,176,998
Number of Sequences: 27780
Number of extensions: 43043
Number of successful extensions: 83
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)