Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E20
         (167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   1.0  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   1.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   1.8  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     19   5.6  

>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 104 KFRGLLK-FGKYSTISKLRNI 163
           +F  L+K FGKY T+ ++ N+
Sbjct: 115 RFNKLVKCFGKYKTMKEVLNL 135


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 9/21 (42%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
 Frame = +2

Query: 104 KFRGLLK-FGKYSTISKLRNI 163
           +F  L+K FGKY T+ ++ N+
Sbjct: 115 RFNKLVKCFGKYKTMKEVLNL 135


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 62  FTKHCLKMLIPKVNKFRGLLKFGKYSTISKL 154
           F KH L  L   ++ +   +K GK+  ++ L
Sbjct: 889 FDKHILDKLPTLISNYIEAVKEGKFMNVNML 919


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +2

Query: 77  LKMLIPKVNKFRGLLKFGKYSTISKLRNIP 166
           +K +  ++NK+RG     K  T+  L  +P
Sbjct: 501 MKQVYQQLNKYRGNGVSLKGETVGLLNALP 530


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,856
Number of Sequences: 438
Number of extensions: 511
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)