Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E16
         (163 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0149 + 20201674-20201891,20202009-20202111,20202658-202027...    25   6.3  
01_07_0197 + 41912207-41912652,41913226-41913800,41913828-419157...    25   6.3  
07_03_0669 - 20542481-20542489,20543212-20543872,20543899-205439...    25   8.3  
05_07_0073 - 27504169-27504882,27504989-27505161,27505302-275054...    25   8.3  

>02_04_0149 +
           20201674-20201891,20202009-20202111,20202658-20202765,
           20202882-20202991,20203170-20203277,20203667-20203733,
           20204044-20204078,20204456-20204501,20204692-20204844
          Length = 315

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 112 DVASTSSLRRFRGRNSD 62
           DVAS   +R+FRG NS+
Sbjct: 91  DVASARVIRKFRGHNSE 107


>01_07_0197 +
           41912207-41912652,41913226-41913800,41913828-41915748,
           41915836-41916049,41916143-41916394,41916469-41916528,
           41916646-41916776,41916898-41917012,41917084-41917239
          Length = 1289

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 12/30 (40%), Positives = 14/30 (46%)
 Frame = -2

Query: 111 TSPVHPHCDGSEEGTPITCYKTSNCTTHAI 22
           TSP +PHCD     T   C+    C  H I
Sbjct: 164 TSPDNPHCDDQYIWTCTDCH-VLGCEVHQI 192


>07_03_0669 -
           20542481-20542489,20543212-20543872,20543899-20543983,
           20545311-20546625
          Length = 689

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/26 (34%), Positives = 11/26 (42%)
 Frame = -2

Query: 96  PHCDGSEEGTPITCYKTSNCTTHAIY 19
           P C      TPI  + TS C +   Y
Sbjct: 431 PFCGAPLSDTPIVSFNTSGCASKTFY 456


>05_07_0073 -
           27504169-27504882,27504989-27505161,27505302-27505485,
           27505604-27505675,27506173-27506733,27506846-27507145
          Length = 667

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 40  ITGFITGYRSSFL*TVAVRMYWRRRLPLEDL 132
           IT  +TG R       AV +Y R + P+E+L
Sbjct: 350 ITSLLTGVRGCGFLNHAVNLYLRYKPPIEEL 380


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,763,629
Number of Sequences: 37544
Number of extensions: 49853
Number of successful extensions: 166
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 14,793,348
effective HSP length: 34
effective length of database: 13,516,852
effective search space used: 256820188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)