Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E15
(320 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 172 1e-44
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 103 9e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 78 3e-16
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 52 2e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 51 5e-08
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 44 6e-06
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 42 3e-05
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.043
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 28 0.40
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 2.8
SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 3.8
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 25 3.8
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 25 3.8
SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|ch... 24 5.0
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 24 5.0
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 24 5.0
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 24 6.6
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 23 8.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 172 bits (419), Expect = 1e-44
Identities = 75/84 (89%), Positives = 82/84 (97%)
Frame = +1
Query: 67 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 246
++++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 247 RGILTLKYPIEHGIITNWDDMEKI 318
RGILTLKYPIEHGI+ NWDDMEKI
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKI 85
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 103 bits (246), Expect = 9e-24
Identities = 46/82 (56%), Positives = 59/82 (71%)
Frame = +1
Query: 73 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG 252
D + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EAQ+ RG
Sbjct: 8 DNQPICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRG 67
Query: 253 ILTLKYPIEHGIITNWDDMEKI 318
+L ++ PIE GII NW DME+I
Sbjct: 68 LLKIQRPIERGIIQNWSDMEEI 89
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 78.2 bits (184), Expect = 3e-16
Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 2/82 (2%)
Frame = +1
Query: 79 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRG 252
A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA++ R
Sbjct: 4 APIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAVRS 63
Query: 253 ILTLKYPIEHGIITNWDDMEKI 318
+L +KYP+E+GII ++++M ++
Sbjct: 64 LLQVKYPMENGIIRDFEEMNQL 85
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 52.0 bits (119), Expect = 2e-08
Identities = 35/101 (34%), Positives = 50/101 (49%), Gaps = 24/101 (23%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG---------MGQK-------- 213
+++DNG+G K G+AG+DAP VFP+++ R G G M K
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIA-TRSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 214 ------DSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEK 315
D ++G++A K +L YPI HG I NWD ME+
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMER 107
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 50.8 bits (116), Expect = 5e-08
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 1/79 (1%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 264
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR----KLSRTSTLVGNDTLIEVGSRSI 82
Query: 265 -KYPIEHGIITNWDDMEKI 318
+ P E +I+NWD ME++
Sbjct: 83 ARSPFERNVISNWDLMEQV 101
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 44.0 bits (99), Expect = 6e-06
Identities = 26/78 (33%), Positives = 42/78 (53%)
Frame = +1
Query: 70 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 249
D+V+A+V+D GS + GF+G+D P+ V PS G + G + Y+ +S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 250 GILTLKYPIEHGIITNWD 303
G + +K I +G + NWD
Sbjct: 62 G-MEIKNAIRNGWVENWD 78
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 41.5 bits (93), Expect = 3e-05
Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 2/80 (2%)
Frame = +1
Query: 70 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 249
+++ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Q
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 250 GI--LTLKYPIEHGIITNWD 303
I + +K +GII +W+
Sbjct: 62 PIPGMEVKNGKSNGIIQDWE 81
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 31.1 bits (67), Expect = 0.043
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 130 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP 273
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 27.9 bits (59), Expect = 0.40
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Frame = +2
Query: 17 RVNIHRVPTQKHTPKCATTMLLRS*LTMAPACAKPVSPV----TTRLAPSSRPSWVALAT 184
RVN+ P K PKC + LT++ + P++P+ T +L S P +
Sbjct: 11 RVNVFLDPETKDIPKCVADLKFPLPLTLSR--STPINPIIRSDTIQLVISCPPVTYSDEI 68
Query: 185 RVSWSAWD 208
+V W A D
Sbjct: 69 QVPWKAID 76
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 2.8
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 190 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 276
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
>SPAC821.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 485
Score = 24.6 bits (51), Expect = 3.8
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Frame = +1
Query: 97 NGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMG-----QKDSYVGDEAQSKR 249
N +GM + R F S VG + VG Q+DSY+ D++ S+R
Sbjct: 318 NATGMYGVSKGHSSSTRRPFFSDVGSSQPAEEFVGSSSSHGRQQDSYIADDSDSER 373
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 24.6 bits (51), Expect = 3.8
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAG 132
+V+DNG+ KAGFAG
Sbjct: 8 IVLDNGAYHIKAGFAG 23
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.6 bits (51), Expect = 3.8
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 234 LITDVRVLLSHADHDTLVARATHDGREDGARRVVTG 127
++TD R+LL + H T DG DGA V+TG
Sbjct: 85 IVTDARLLLCNMTHRGATGADTRDG--DGA-GVMTG 117
>SPBP23A10.12 |||FRG1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 245
Score = 24.2 bits (50), Expect = 5.0
Identities = 14/45 (31%), Positives = 22/45 (48%)
Frame = +2
Query: 71 TMLLRS*LTMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 205
T+LL+S L +C+K T+ A S+ W+A + AW
Sbjct: 99 TILLKSCLGKYMSCSKSGDLYCTQEAVGSQEQWIAENLGSGFWAW 143
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 24.2 bits (50), Expect = 5.0
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = -1
Query: 173 RPTMDGKTARGASSPAKPALHMPEPL 96
RP+ DG+ A G A P++ P P+
Sbjct: 950 RPSNDGRKASGPRPAAPPSIPPPLPV 975
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 24.2 bits (50), Expect = 5.0
Identities = 8/11 (72%), Positives = 9/11 (81%)
Frame = -2
Query: 235 PHHRRKSPSVP 203
PHHR +SPS P
Sbjct: 125 PHHRERSPSPP 135
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 23.8 bits (49), Expect = 6.6
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +2
Query: 143 LAPSSRPSWVALATRVSWSAWDRR 214
L P S P+W+++ V AW R
Sbjct: 158 LFPQSFPTWISVYRNVPEKAWANR 181
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 23.4 bits (48), Expect = 8.7
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -1
Query: 206 PMPTMTPWWRG 174
P+ MTPW+RG
Sbjct: 914 PLEIMTPWYRG 924
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,415,684
Number of Sequences: 5004
Number of extensions: 27503
Number of successful extensions: 83
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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