Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E15
(320 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 188 8e-49
J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein ( C.ele... 188 8e-49
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-48
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 186 2e-48
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 186 2e-48
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 186 2e-48
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 186 2e-48
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 186 2e-48
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 186 2e-48
J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein ( C.ele... 186 2e-48
J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein ( C.ele... 186 2e-48
J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein ( C.ele... 182 4e-47
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 177 1e-45
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 147 1e-36
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 100 5e-22
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 93 3e-20
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 76 5e-15
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 59 6e-10
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 38 0.001
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 38 0.001
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 34 0.026
AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical... 31 0.18
AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen pro... 30 0.32
Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical pr... 30 0.43
AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr prote... 30 0.43
Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical pr... 28 1.3
U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical pr... 28 1.3
AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical ... 28 1.7
AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical ... 28 1.7
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 27 2.3
Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical pr... 27 3.0
Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical pr... 27 3.0
U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protei... 27 3.0
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 27 4.0
L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen prote... 26 5.3
AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen pro... 26 5.3
U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical pr... 26 7.0
U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protei... 26 7.0
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 26 7.0
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical pr... 25 9.2
Z48006-4|CAA88048.1| 429|Caenorhabditis elegans Hypothetical pr... 25 9.2
L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen... 25 9.2
AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen prot... 25 9.2
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 188 bits (458), Expect = 8e-49
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01046-1|AAA27890.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene IV, 5' end. ).
Length = 86
Score = 188 bits (458), Expect = 8e-49
Identities = 85/86 (98%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 83/86 (96%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDDDVAAL++DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALILDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01044-1|AAA27889.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene III, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01042-1|AAA27887.1| 86|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene I, 5' end. ).
Length = 86
Score = 186 bits (454), Expect = 2e-48
Identities = 84/86 (97%), Positives = 86/86 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDD+VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDMEKI 318
SKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKI 86
>J01043-1|AAA27888.1| 83|Caenorhabditis elegans protein (
C.elegans (nematode)actin gene II, 5' end. ).
Length = 83
Score = 182 bits (444), Expect = 4e-47
Identities = 82/83 (98%), Positives = 83/83 (100%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 240
MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
Query: 241 SKRGILTLKYPIEHGIITNWDDM 309
SKRGILTLKYPIEHGI+TNWDDM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDM 83
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 177 bits (431), Expect = 1e-45
Identities = 79/84 (94%), Positives = 84/84 (100%)
Frame = +1
Query: 67 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 246
++++AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK
Sbjct: 2 EEEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK 61
Query: 247 RGILTLKYPIEHGIITNWDDMEKI 318
RGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 62 RGILTLKYPIEHGIVTNWDDMEKI 85
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 147 bits (357), Expect = 1e-36
Identities = 66/68 (97%), Positives = 68/68 (100%)
Frame = +1
Query: 115 KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 294
+AGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+T
Sbjct: 5 RAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVT 64
Query: 295 NWDDMEKI 318
NWDDMEKI
Sbjct: 65 NWDDMEKI 72
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 99.5 bits (237), Expect = 5e-22
Identities = 44/87 (50%), Positives = 62/87 (71%), Gaps = 3/87 (3%)
Frame = +1
Query: 67 DDDVAA---LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEA 237
D DV A +V+DNGSG+ KAGFAG+ P+ F + VGRP++ VM G D ++G +A
Sbjct: 2 DYDVIANQPVVIDNGSGVIKAGFAGEQQPKVRFANFVGRPKYHRVMAGGLDGDIFIGPKA 61
Query: 238 QSKRGILTLKYPIEHGIITNWDDMEKI 318
+S RG+ +++YP+EHGI+ NW DMEKI
Sbjct: 62 ESNRGLFSIEYPMEHGIVNNWSDMEKI 88
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 93.5 bits (222), Expect = 3e-20
Identities = 41/42 (97%), Positives = 42/42 (100%)
Frame = +1
Query: 193 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 318
MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGI+TNWDDMEKI
Sbjct: 1 MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI 42
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 76.2 bits (179), Expect = 5e-15
Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +1
Query: 85 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEAQSKRGIL 258
+VVDNG+G K G+AG + P +FPS+VGRP R + + KD VG+E R +L
Sbjct: 9 IVVDNGTGFVKCGYAGTNFPAHIFPSMVGRPIVRSTQRVGNIEIKDLMVGEECSQLRQML 68
Query: 259 TLKYPIEHGIITNWDDMEKI 318
+ YP+++GI+ NWDDM +
Sbjct: 69 DINYPMDNGIVRNWDDMAHV 88
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 59.3 bits (137), Expect = 6e-10
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 13/98 (13%)
Frame = +1
Query: 61 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSI------VGRPRHQG------VMVGM 204
M + A V+DNG+G K G+AG+ P+ + PS V Q V G+
Sbjct: 1 MSAHQLPACVIDNGTGYTKLGYAGNTEPQFIIPSAIAVKDKVASSNSQAMRWNNRVGAGI 60
Query: 205 GQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDMEK 315
D ++GDEA S T+KYPI HGI+ +WD ME+
Sbjct: 61 DDLDFFIGDEALSPAATNYTVKYPIRHGIVEDWDLMER 98
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 76 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 255
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 256 LTLKYPIEHGIITNWDDMEKI 318
++ PIE G + NWD ++I
Sbjct: 58 FYVR-PIERGYVVNWDTQQQI 77
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 38.3 bits (85), Expect = 0.001
Identities = 23/81 (28%), Positives = 40/81 (49%)
Frame = +1
Query: 76 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 255
+ ++ DNG K G ++PR V SIV + +H+ V + + +E K +
Sbjct: 3 LTTIIFDNGGHNMKIGTIDSESPRLVPNSIV-KAKHEKKRVFVAHEQ----EECSDKFSL 57
Query: 256 LTLKYPIEHGIITNWDDMEKI 318
++ PIE G + NWD ++I
Sbjct: 58 FYVR-PIERGYVVNWDTQQQI 77
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 33.9 bits (74), Expect = 0.026
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 70 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIV 168
D+V+ LV D GS + GFAG++ P+ PS +
Sbjct: 9 DEVSGLVFDAGSQSFRVGFAGEEYPKGDIPSYI 41
>AF003386-14|AAK82896.1| 811|Caenorhabditis elegans Hypothetical
protein F59E12.1 protein.
Length = 811
Score = 31.1 bits (67), Expect = 0.18
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -1
Query: 206 PMPTMTPWWRGRPTMDGKTARGASSPAKPALHMPEPL 96
P T TP RGRP + ++ P P P+PL
Sbjct: 336 PPATQTPRSRGRPRIHSSASKKTEKPETPRAESPDPL 372
>AF067616-11|AAC19194.2| 627|Caenorhabditis elegans Collagen
protein 99 protein.
Length = 627
Score = 30.3 bits (65), Expect = 0.32
Identities = 17/36 (47%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLRR**GPEQER-YPHPEVP 272
G P P G G HGTEG + GPE + YP P P
Sbjct: 510 GPPGPMGLRGPHGTEGETGK-QGPEGSKGYPGPMGP 544
>Z48045-2|CAA88100.2| 967|Caenorhabditis elegans Hypothetical
protein C41C4.4 protein.
Length = 967
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 189 TLVARATHDGREDGARRVVTGETGFAHAGA 100
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>AF435952-1|AAL30828.1| 967|Caenorhabditis elegans Ser/Thr protein
kinase protein.
Length = 967
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = -3
Query: 189 TLVARATHDGREDGARRVVTGETGFAHAGA 100
T+V R T DGRE +RVV+ FAH A
Sbjct: 531 TVVYRGTFDGREVAVKRVVSEFVKFAHREA 560
>Z70681-1|CAA94580.1| 307|Caenorhabditis elegans Hypothetical
protein C30F2.1 protein.
Length = 307
Score = 28.3 bits (60), Expect = 1.3
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGL 218
G P PPGC G G GL
Sbjct: 112 GPPGPPGCRGEPGPSGL 128
>U53153-7|AAC69037.1| 1280|Caenorhabditis elegans Hypothetical
protein T19A5.1 protein.
Length = 1280
Score = 28.3 bits (60), Expect = 1.3
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = +2
Query: 5 RRCRRVNIHRVPTQKHTPKCATTML 79
R+C+R I+R P H ATTM+
Sbjct: 467 RKCQRAQINRFPATNHKLNWATTMI 491
>AL023837-1|CAA19499.1| 718|Caenorhabditis elegans Hypothetical
protein Y37H2C.1 protein.
Length = 718
Score = 27.9 bits (59), Expect = 1.7
Identities = 17/75 (22%), Positives = 28/75 (37%)
Frame = +1
Query: 43 TKTHAKMCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSY 222
+K H D L++ +C GF G A + + G HQ + + +
Sbjct: 495 SKRHGMFVVDSSLRLIIKIVFSICSIGFTGYFAYKYFYERPSGLQSHQWICTPLSSQQKV 554
Query: 223 VGDEAQSKRGILTLK 267
+ D+ KR L K
Sbjct: 555 LEDDKNVKRRPLNSK 569
>AF025453-5|AAY55851.1| 279|Caenorhabditis elegans Hypothetical
protein C08F1.11 protein.
Length = 279
Score = 27.9 bits (59), Expect = 1.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 115 KAGFAGDDAPRAVFPSIVGRPRHQG 189
KA + G D P+A F I+G ++G
Sbjct: 44 KASYLGHDTPQATFREIIGNKEYRG 68
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHPEVPHRTRYH 290
G P PG HGRHG+ R G R+ P P R +H
Sbjct: 358 GPPHCPGRHGRHGSRSHSPRGHG-HGGRHGPPHCPGRHGHH 397
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/42 (33%), Positives = 16/42 (38%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHPEVPHRTRYHH 293
G PP C GRHG GP + P R +HH
Sbjct: 383 GRHGPPHCPGRHGHH-------GPPHHHHHDGRSPSRHGHHH 417
>Z78415-7|CAH60759.1| 844|Caenorhabditis elegans Hypothetical
protein C17G1.4b protein.
Length = 844
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 275
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>Z78415-5|CAB01670.1| 925|Caenorhabditis elegans Hypothetical
protein C17G1.4a protein.
Length = 925
Score = 27.1 bits (57), Expect = 3.0
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGL---LRR**GPEQERYPHPEVPH 275
G PS PG G HGT G L +Q++ H +PH
Sbjct: 366 GQPSTPGTPGSHGTVGSNAPLSHQKPSQQQQSMHNHLPH 404
>U70849-7|AAF99925.2| 332|Caenorhabditis elegans Collagen protein
111 protein.
Length = 332
Score = 27.1 bits (57), Expect = 3.0
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHP 263
GS PG HGR G G+ + P YP P
Sbjct: 193 GSKGAPGTHGRQGMPGVRYQLGEPGPAGYPGP 224
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 26.6 bits (56), Expect = 4.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGL 218
G P PPG G++GT G+
Sbjct: 250 GRPGPPGAPGKNGTPGV 266
>L23651-12|AAA27958.1| 305|Caenorhabditis elegans Collagen protein
90 protein.
Length = 305
Score = 26.2 bits (55), Expect = 5.3
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLL 221
G P PPG G+ G EG++
Sbjct: 96 GPPGPPGLPGKRGDEGVV 113
>AC024214-13|AAM97984.1| 296|Caenorhabditis elegans Collagen
protein 106 protein.
Length = 296
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEG 215
G P PPG +G++G +G
Sbjct: 219 GPPGPPGANGKNGKQG 234
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEG 215
G P P GC G GT+G
Sbjct: 144 GPPGPDGCAGEPGTDG 159
>U80033-2|AAM15608.1| 1009|Caenorhabditis elegans Hypothetical
protein T23H2.3 protein.
Length = 1009
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 59 KCATTMLLRS*LTMAPACAKPVSPVTTRLAPSSRP 163
KC+T RS + + KPV+P+T +L S P
Sbjct: 86 KCSTDDHYRSRSFIDNSFEKPVTPITKKLQESDEP 120
>U42439-7|AAA83511.1| 304|Caenorhabditis elegans Collagen protein
110 protein.
Length = 304
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Gaps = 3/19 (15%)
Frame = +3
Query: 168 GSPSP---PGCHGRHGTEG 215
G+P P PG HGRHG G
Sbjct: 106 GAPGPSGTPGRHGRHGAPG 124
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLRR**GPEQERYPHPEVP 272
G P PPG G G G GP ++ P P P
Sbjct: 187 GPPGPPGLKGMPGIPGNQGEDAGPGRQGMPGPTGP 221
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEG 215
G+P PPG G+ G EG
Sbjct: 96 GAPGPPGNPGKRGDEG 111
Score = 25.4 bits (53), Expect = 9.2
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +2
Query: 95 TMAPACAKPVSPVTTRLAPSSRP 163
T AP P TTR AP+S+P
Sbjct: 318 TRAPPATTRAPPATTRPAPASQP 340
>Z68216-1|CAA92459.1| 493|Caenorhabditis elegans Hypothetical
protein F27C8.1 protein.
Length = 493
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +2
Query: 167 WVALATRVSWSAWDRRTLTSVMRP 238
W+A+ T ++ W RRT+ RP
Sbjct: 389 WLAIGTAIAALFWLRRTMPDASRP 412
>Z48006-4|CAA88048.1| 429|Caenorhabditis elegans Hypothetical
protein F19C6.3 protein.
Length = 429
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = -3
Query: 87 ERSNIVVAHFGVCFCVGTRWILT 19
+RS+ ++AH+ +G WILT
Sbjct: 21 DRSSYILAHYMNLLSIGESWILT 43
>L15419-1|AAA17726.1| 308|Caenorhabditis elegans col-40 collagen
protein.
Length = 308
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEG 215
G P PPG G GT+G
Sbjct: 201 GPPGPPGTSGNPGTDG 216
>AC024778-1|AAF60567.1| 393|Caenorhabditis elegans Collagen protein
115 protein.
Length = 393
Score = 25.4 bits (53), Expect = 9.2
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEG 215
G P PPG HG G+ G
Sbjct: 282 GPPGPPGLHGSPGSYG 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,263,750
Number of Sequences: 27780
Number of extensions: 179774
Number of successful extensions: 1247
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 376873630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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