Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E15
(320 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein. 25 0.30
AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C prot... 23 1.2
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 22 1.6
DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride c... 21 2.8
DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride c... 21 2.8
AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl sub... 21 2.8
AB023025-1|BAA74592.1| 133|Apis mellifera actin protein. 21 2.8
DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization prot... 20 6.4
AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor typ... 20 6.4
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.4
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 8.4
>DQ435331-1|ABD92646.1| 135|Apis mellifera OBP14 protein.
Length = 135
Score = 24.6 bits (51), Expect = 0.30
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 72 VVAHFGVCFCVGTRWILTLRQRL 4
+V FG C CVG I L+ RL
Sbjct: 4 IVLIFGFCVCVGALTIEELKTRL 26
>AB013288-1|BAA87894.1| 149|Apis mellifera protein kinase C
protein.
Length = 149
Score = 22.6 bits (46), Expect = 1.2
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 40 DTKTHAKMCDDDVAALVVDNGSGMCKAGFAGD 135
D K + D D + D GMCK G +GD
Sbjct: 110 DLKLDNVLLDQDGHIKIAD--FGMCKEGISGD 139
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 22.2 bits (45), Expect = 1.6
Identities = 8/12 (66%), Positives = 9/12 (75%)
Frame = +2
Query: 35 VPTQKHTPKCAT 70
VP+ KH KCAT
Sbjct: 160 VPSVKHVAKCAT 171
>DQ667182-1|ABG75734.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 2.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 171 SPSPPGCHGRHG 206
+P PPG G HG
Sbjct: 331 NPGPPGVPGDHG 342
Score = 20.2 bits (40), Expect = 6.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 168 GSPSPPGCHGRH 203
G P PG HG H
Sbjct: 333 GPPGVPGDHGDH 344
>DQ667181-1|ABG75733.1| 445|Apis mellifera GABA-gated chloride
channel protein.
Length = 445
Score = 21.4 bits (43), Expect = 2.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 171 SPSPPGCHGRHG 206
+P PPG G HG
Sbjct: 331 NPGPPGVPGDHG 342
Score = 20.2 bits (40), Expect = 6.4
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = +3
Query: 168 GSPSPPGCHGRH 203
G P PG HG H
Sbjct: 333 GPPGVPGDHGDH 344
>AF094822-1|AAC63381.1| 365|Apis mellifera GABA receptor Rdl
subunit protein.
Length = 365
Score = 21.4 bits (43), Expect = 2.8
Identities = 7/12 (58%), Positives = 8/12 (66%)
Frame = +3
Query: 171 SPSPPGCHGRHG 206
+P PPG G HG
Sbjct: 270 NPGPPGVPGDHG 281
Score = 21.4 bits (43), Expect = 2.8
Identities = 8/19 (42%), Positives = 10/19 (52%)
Frame = +3
Query: 168 GSPSPPGCHGRHGTEGLLR 224
G P PG HG H + +R
Sbjct: 272 GPPGVPGDHGDHAPKQTVR 290
>AB023025-1|BAA74592.1| 133|Apis mellifera actin protein.
Length = 133
Score = 21.4 bits (43), Expect = 2.8
Identities = 11/37 (29%), Positives = 15/37 (40%)
Frame = +2
Query: 95 TMAPACAKPVSPVTTRLAPSSRPSWVALATRVSWSAW 205
TM P A + T LAPS+ + +S W
Sbjct: 79 TMYPGIADRMQKEITALAPSTMKIKIIAPPEKKYSVW 115
>DQ666693-1|ABG29167.1| 250|Apis mellifera MAX dimerization protein
protein.
Length = 250
Score = 20.2 bits (40), Expect = 6.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 186 GCHGRHGTEGL 218
G HG HG GL
Sbjct: 133 GLHGLHGLHGL 143
Score = 20.2 bits (40), Expect = 6.4
Identities = 7/11 (63%), Positives = 7/11 (63%)
Frame = +3
Query: 186 GCHGRHGTEGL 218
G HG HG GL
Sbjct: 136 GLHGLHGLHGL 146
>AF498306-5|AAM19330.1| 456|Apis mellifera dopamine receptor type
D2 protein.
Length = 456
Score = 20.2 bits (40), Expect = 6.4
Identities = 7/17 (41%), Positives = 9/17 (52%)
Frame = -2
Query: 244 CSGPHHRRKSPSVPCRP 194
C G RR P+ C+P
Sbjct: 409 CPGRVRRRYQPAFRCKP 425
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 84 RSNIVVAHFGVCFCV 40
++N+VV H G C V
Sbjct: 156 QTNVVVTHNGSCLYV 170
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 19.8 bits (39), Expect = 8.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Frame = -3
Query: 84 RSNIVVAHFGVCFCV 40
++N+VV H G C V
Sbjct: 156 QTNVVVTHNGSCLYV 170
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,698
Number of Sequences: 438
Number of extensions: 2072
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used: 6968808
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
- SilkBase 1999-2023 -