Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E14
         (200 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    26   0.60 
SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces p...    25   1.8  
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    25   1.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    24   2.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    24   3.2  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    23   4.2  
SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type tran...    23   4.2  
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p...    23   5.5  
SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces...    23   5.5  
SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4 |Sc...    23   7.3  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    23   7.3  
SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces p...    22   9.7  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    22   9.7  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    22   9.7  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 26.2 bits (55), Expect = 0.60
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 192 HHSSPPLREDIGLQSQTTFAHQH*YTHNSATPGLKNLTDTSKCASQHSP 46
           H  SPPL      +S    A +     + + P +   +DT K +SQHSP
Sbjct: 23  HKPSPPLPSRRKGKSALRSALEKKNRKSKSKPKVTITSDTPKVSSQHSP 71


>SPCC1682.15 |mug122||PX/PXA domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 749

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = -3

Query: 183 SPPLREDIGLQSQTTFAHQH*YTHNSATPGLKNLTDTSKCASQHSPQNCNPK 28
           S PL +DI         HQ     +S+ P L NLT+ S+  S  + ++  PK
Sbjct: 421 SHPLVDDIYNGFDVDKKHQ-----SSSVPTLPNLTNISRVLSNKTSKSAKPK 467


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
          Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -3

Query: 87 NLTDTSKCASQHSPQNCNPKTPSCRIPA 4
          N  D S  ++Q++  N N +TPS  +PA
Sbjct: 8  NFYDKSTPSNQNNYSNNNSRTPSYSLPA 35


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 24.2 bits (50), Expect = 2.4
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -3

Query: 75  TSKCASQHSPQNCNPKTPSCRIP 7
           T K +S+H+P N N + PS   P
Sbjct: 142 TRKGSSRHAPNNSNIQPPSAAPP 164


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 81  TDTSKCASQHSPQNCNPKTPSC 16
           T+ + C SQ     C  + PSC
Sbjct: 266 TEKTSCCSQEKKSCCTSEKPSC 287



 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -3

Query: 81  TDTSKCASQHSPQNCNPKTPSC 16
           ++   C SQ     C+ K PSC
Sbjct: 234 SEKPSCCSQEKKSCCSSKKPSC 255


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -2

Query: 196 TPPQFTTTSRGYRPPKPN 143
           TPP+    SR +RP +P+
Sbjct: 542 TPPELNDGSRQHRPSRPS 559


>SPCC290.04 |ams2|SPCC4F11.01|cell cycle regulated GATA-type
           transcription factor Ams2|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 697

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 7/26 (26%), Positives = 15/26 (57%)
 Frame = -2

Query: 187 QFTTTSRGYRPPKPNHLCSPTLIHTQ 110
           + T+    +  P PNH+  P++++ Q
Sbjct: 446 RLTSLDSTHSAPDPNHISKPSVVNQQ 471


>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 277

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 190 PQFTTTSRGYRPPKPNHL 137
           P+   TS G+RPP P  +
Sbjct: 167 PESKQTSDGHRPPSPTSI 184


>SPAC4H3.03c |||glucan 1,4-alpha-glucosidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 649

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +3

Query: 117 CISVGEQRWFGFGGLYPREVVVNCGGVV 200
           C+  G+Q       +YP E ++  GGV+
Sbjct: 174 CVPSGDQLKIDLELIYPAEHLIEGGGVI 201


>SPCC330.05c |ura4||orotidine 5'-phosphate decarboxylase Ura4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 264

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 10/17 (58%), Positives = 11/17 (64%), Gaps = 2/17 (11%)
 Frame = +3

Query: 147 GFGGLY--PREVVVNCG 191
           G G  Y  P EV+VNCG
Sbjct: 209 GLGQQYRTPEEVIVNCG 225


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/32 (40%), Positives = 15/32 (46%)
 Frame = -3

Query: 111 NSATPGLKNLTDTSKCASQHSPQNCNPKTPSC 16
           NS +P L       K  S  SP +  P TPSC
Sbjct: 281 NSDSPELS----ADKVLSHCSPIDARPSTPSC 308


>SPAC110.03 |cdc42||Rho family GTPase Cdc42|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 192

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 174 LREDIGLQSQTTFAHQH*YTH 112
           LR+D  +Q +    HQH  TH
Sbjct: 119 LRDDPSVQQKLARQHQHPLTH 139


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 13/34 (38%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
 Frame = -3

Query: 156 LQSQTTFAHQH*YTHNSATPG--LKNLTDTSKCA 61
           L + T F H H Y H    P   L N T   K A
Sbjct: 182 LLAATAFMHHHWYLHRDLKPSNLLMNNTGEIKLA 215


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 120  ISVGEQRWFGFGGLYPREV 176
            +S+    W GF  LYP+ +
Sbjct: 3397 LSIERNEWSGFLNLYPKRM 3415


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 913,515
Number of Sequences: 5004
Number of extensions: 14711
Number of successful extensions: 33
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 46
effective length of database: 2,132,294
effective search space used: 42645880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)