Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E14
         (200 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0603 - 12057820-12058094,12058164-12058305,12058469-120585...    27   2.8  
12_01_0839 + 7833111-7833380,7833925-7834161                           26   3.6  
02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255     26   4.8  
11_05_0109 + 19126849-19126917,19129883-19130620                       25   6.4  
11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872     25   6.4  
08_02_1508 + 27602104-27602265,27602398-27602449,27603357-276047...    25   6.4  
07_03_1373 - 26110436-26110584,26110585-26110752,26110829-261108...    25   6.4  
09_02_0376 + 8140260-8140811,8141390-8141464,8141542-8141598,814...    25   8.4  
02_03_0412 - 18749430-18749587,18749696-18749857,18750062-187501...    25   8.4  

>02_02_0603 -
           12057820-12058094,12058164-12058305,12058469-12058515,
           12058678-12058850,12059408-12059485,12059998-12060060,
           12060135-12060207,12061989-12062377,12063225-12063304
          Length = 439

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = -3

Query: 168 EDIGLQSQTTFAHQH*YTHNSATPGLKNLTDTSKCASQHSPQNCNPKTP--SCRIPA 4
           + +G+Q++ T       +  S T GLKN+T        ++P+N        +CR PA
Sbjct: 44  QQVGMQTRNTLTDATYASQGSTTSGLKNVTKPE--LPYNAPKNLTTTRSIFTCRAPA 98


>12_01_0839 + 7833111-7833380,7833925-7834161
          Length = 168

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +2

Query: 140 VVWLWRPISSRSGGELW 190
           ++WLWRPI+ R     W
Sbjct: 74  MIWLWRPIAPRHAPICW 90


>02_05_1017 - 33521135-33522604,33522727-33522976,33523078-33524255
          Length = 965

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 195 HHHSSPPLREDIGLQSQTTFAH 130
           HHH++PPL   +    +  +AH
Sbjct: 101 HHHAAPPLSNALAAALKRAYAH 122


>11_05_0109 + 19126849-19126917,19129883-19130620
          Length = 268

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -2

Query: 151 KPNHLCSPTLIHTQLCNPWP*KSDRYVKMCVSTLPTKLQSKNTLVP 14
           KP +    TL+HT   NPW   S   +   +  L T +Q+  T+VP
Sbjct: 221 KPWNKWRATLMHTYFSNPWVFIS--LLAAIILLLATLMQTIYTVVP 264


>11_05_0107 + 19119259-19119906,19121154-19121399,19121405-19121872
          Length = 453

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 15/38 (39%), Positives = 20/38 (52%)
 Frame = -2

Query: 127 TLIHTQLCNPWP*KSDRYVKMCVSTLPTKLQSKNTLVP 14
           +LIHT   NPW   S   V   +  + T LQ+  T+VP
Sbjct: 413 SLIHTYFSNPWVFIS--LVAAIILLVATLLQTAYTVVP 448


>08_02_1508 +
           27602104-27602265,27602398-27602449,27603357-27604757,
           27604833-27606140,27606594-27607435
          Length = 1254

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 17/48 (35%), Positives = 26/48 (54%)
 Frame = -3

Query: 150 SQTTFAHQH*YTHNSATPGLKNLTDTSKCASQHSPQNCNPKTPSCRIP 7
           S+TT    H  +H S     ++ TD +   ++HSPQ  + KT S +IP
Sbjct: 357 SETTSKEAHDKSHLSGFFKARSHTDETATPTKHSPQE-DSKT-STKIP 402


>07_03_1373 -
           26110436-26110584,26110585-26110752,26110829-26110896,
           26111755-26111800,26111929-26112025,26112802-26112884,
           26112987-26113062,26113147-26113195,26113517-26113601,
           26114247-26114331
          Length = 301

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/34 (29%), Positives = 20/34 (58%)
 Frame = -3

Query: 120 YTHNSATPGLKNLTDTSKCASQHSPQNCNPKTPS 19
           + +N+ TP + + +D    A+ H+P+ C   +PS
Sbjct: 248 WEYNAGTPLVHSPSDYCDDANLHNPRGCLQNSPS 281


>09_02_0376 +
           8140260-8140811,8141390-8141464,8141542-8141598,
           8142645-8142833
          Length = 290

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +2

Query: 134 AKVVWLWRPISSRSGGELWW 193
           A  V LW  I++  GG  WW
Sbjct: 149 AAAVRLWDSITASGGGGAWW 168


>02_03_0412 -
           18749430-18749587,18749696-18749857,18750062-18750194,
           18751640-18751744,18751818-18751935,18752232-18752320,
           18752407-18753660,18753785-18753831,18754285-18754339,
           18754783-18754884
          Length = 740

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 10/14 (71%), Positives = 11/14 (78%)
 Frame = -3

Query: 111 NSATPGLKNLTDTS 70
           NS TP +KNLTD S
Sbjct: 314 NSLTPSIKNLTDES 327


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,567,712
Number of Sequences: 37544
Number of extensions: 115763
Number of successful extensions: 378
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 378
length of database: 14,793,348
effective HSP length: 46
effective length of database: 13,066,324
effective search space used: 261326480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)