Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E14
         (200 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical pr...    28   0.79 
Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical pr...    26   3.2  
Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in bl...    25   7.4  
AF016684-3|AAB66209.2|  157|Caenorhabditis elegans Hypothetical ...    25   7.4  
AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical ...    25   7.4  

>U70846-2|ABI18146.1|  647|Caenorhabditis elegans Hypothetical
           protein D1073.1b protein.
          Length = 647

 Score = 28.3 bits (60), Expect = 0.79
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 51  SVETHILTYRSDF*GQGLQSCVCISVGEQRWFGFGGL 161
           +V++H  TY SD    G+    C+S G Q + G   L
Sbjct: 462 AVQSHKFTYNSDIWSLGVTMWECMSYGRQPFDGLSNL 498


>Z48367-5|CAE54886.1|  993|Caenorhabditis elegans Hypothetical
           protein C33B4.3b protein.
          Length = 993

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 157 PPKPNHLCSPTLIHTQLCNP 98
           PP P H C PT++H +   P
Sbjct: 770 PPPPPH-CEPTMVHVEFTPP 788


>Z48367-4|CAA88324.1| 1110|Caenorhabditis elegans Hypothetical
           protein C33B4.3a protein.
          Length = 1110

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 157 PPKPNHLCSPTLIHTQLCNP 98
           PP P H C PT++H +   P
Sbjct: 770 PPPPPH-CEPTMVHVEFTPP 788


>Z69646-7|CAA93471.3| 1484|Caenorhabditis elegans Hypothetical protein
            F57C7.4 protein.
          Length = 1484

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
 Frame = -3

Query: 156  LQSQTTFAHQH*YT--HNSATPG-LKNLTDTSKCASQHSPQNCNPKTPS-CR 13
            +Q+Q+   ++  YT   N + P  L N+T +S  AS +S  NC   T S CR
Sbjct: 1036 IQTQSVNVNRDGYTGVFNVSGPNKLSNITFSSYFASSYSSWNCGSGTSSTCR 1087


>U58742-4|AAB36856.1|  242|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 3 protein.
          Length = 242

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -3

Query: 75  TSKCASQHSPQNCNPKTPSCR 13
           T +C  Q +PQ   P TP C+
Sbjct: 124 TQQCQQQCTPQCQQPSTPQCQ 144


>AF016684-3|AAB66209.2|  157|Caenorhabditis elegans Hypothetical
           protein F45C12.10a protein.
          Length = 157

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 VCISVGEQRWFGFGGLYPREVVV 182
           VC+  GE++ +GFG  +P E +V
Sbjct: 14  VCLLGGERQKYGFGFCFPWEKLV 36


>AF016684-2|ABC71832.1|  224|Caenorhabditis elegans Hypothetical
           protein F45C12.10b protein.
          Length = 224

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 VCISVGEQRWFGFGGLYPREVVV 182
           VC+  GE++ +GFG  +P E +V
Sbjct: 73  VCLLGGERQKYGFGFCFPWEKLV 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,316,647
Number of Sequences: 27780
Number of extensions: 94060
Number of successful extensions: 313
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 285
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 12,740,198
effective HSP length: 46
effective length of database: 11,462,318
effective search space used: 229246360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)