Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E13
(384 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 117 6e-28
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 64 1e-11
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 58 4e-10
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 56 3e-09
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 51 7e-08
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 32 0.027
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 29 0.19
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 29 0.19
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 27 0.76
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 27 1.3
SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyc... 24 9.4
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 24 9.4
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 117 bits (282), Expect = 6e-28
Identities = 58/95 (61%), Positives = 71/95 (74%)
Frame = +1
Query: 10 KISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDS 189
KI +DQYS AFADALD P+ALAENSGLS I+AL+ VKAR V EN LGIDC+ S
Sbjct: 441 KIPGIDQYSMGAFADALDTIPLALAENSGLSSIEALTAVKARHVKENKAYLGIDCLQTGS 500
Query: 190 NDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 294
NDM+ VI+ L KKQQ+ LATQL +M+LK++D+
Sbjct: 501 NDMRKQFVIDPLIGKKQQLLLATQLCRMVLKVNDI 535
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 63.7 bits (148), Expect = 1e-11
Identities = 29/97 (29%), Positives = 54/97 (55%), Gaps = 2/97 (2%)
Frame = +1
Query: 10 KISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGID--CMGN 183
K + Q++ + + +A + P ++EN+GL P D +S++ A EN ++G+D C +
Sbjct: 429 KTPGIYQHAIKQYGEAFEVVPRTISENAGLDPTDVISKLYAAHHKENGESIGVDVECEND 488
Query: 184 DSNDMKALNVIESLHSKKQQVALATQLVKMILKIDDV 294
+ D K + + L +KK + LAT+ V +L +D V
Sbjct: 489 GTLDAKEAGIFDVLLAKKSAIRLATETVLTVLNVDQV 525
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 58.4 bits (135), Expect = 4e-10
Identities = 33/96 (34%), Positives = 51/96 (53%)
Frame = +1
Query: 13 ISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSN 192
I + Q+ YRA ADA++ P L +N G +PI AL+E++A+ E + GID
Sbjct: 427 IEGVAQWPYRAVADAIEIIPRTLVQNCGANPIKALTELRAKH-AEGQHSFGIDGETGRVV 485
Query: 193 DMKALNVIESLHSKKQQVALATQLVKMILKIDDVRS 300
DM V E K Q + A + ++L++DD+ S
Sbjct: 486 DMHEYGVWEPEAVKLQSIKTAIESACLLLRVDDIVS 521
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 55.6 bits (128), Expect = 3e-09
Identities = 29/85 (34%), Positives = 49/85 (57%)
Frame = +1
Query: 40 RAFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSNDMKALNVIE 219
RAF++AL+ P+ LAEN+GL+ I ++E+++R GI+ ++ NV++
Sbjct: 440 RAFSEALEIIPVTLAENAGLNAIQVVTELRSRH-ANGEKTAGINVRKGIVTNILEENVLQ 498
Query: 220 SLHSKKQQVALATQLVKMILKIDDV 294
L + LA + KMI+KIDD+
Sbjct: 499 PLLVNISAIQLAAETTKMIMKIDDI 523
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 50.8 bits (116), Expect = 7e-08
Identities = 25/88 (28%), Positives = 50/88 (56%)
Frame = +1
Query: 43 AFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSNDMKALNVIES 222
AFA AL P LA+N+G + ++++KA + N +G+D + DM+A ++E+
Sbjct: 434 AFAKALSQLPTILADNAGFDSSELVAQLKAAHY-DGNDTMGLDMDEGEIADMRAKGILEA 492
Query: 223 LHSKKQQVALATQLVKMILKIDDVRSPA 306
L K+ V+ ++ +++L++D + A
Sbjct: 493 LKLKQAVVSSGSEGAQLLLRVDTILKAA 520
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 32.3 bits (70), Expect = 0.027
Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 1/94 (1%)
Frame = +1
Query: 13 ISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVT-ENNPNLGIDCMGNDS 189
IS Q AFA +L+ P L +N+G + L++++ + E + +D G +
Sbjct: 432 ISGKQQNFIAAFARSLEVIPRQLCDNAGFDSTNILNKLRMQHAKGEMWAGVDMDSEGVAN 491
Query: 190 NDMKALNVIESLHSKKQQVALATQLVKMILKIDD 291
N K V E K + AT+ +IL +D+
Sbjct: 492 NFEKF--VWEPSTVKSNAILSATEAATLILSVDE 523
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 29.5 bits (63), Expect = 0.19
Identities = 19/84 (22%), Positives = 36/84 (42%)
Frame = +1
Query: 43 AFADALDATPMALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSNDMKALNVIES 222
A+ADAL P LA NS DA+ V ++ +G+D D + + ++
Sbjct: 440 AYADALLIIPKTLAANSSYDTQDAI--VALQEEASEGYKVGLDLKTGMPFDPEVEGIYDN 497
Query: 223 LHSKKQQVALATQLVKMILKIDDV 294
+ + AT + ++ +D +
Sbjct: 498 YRVIRHMLHSATVIASNLISVDQI 521
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.5 bits (63), Expect = 0.19
Identities = 25/103 (24%), Positives = 41/103 (39%), Gaps = 11/103 (10%)
Frame = +1
Query: 13 ISSLDQYSYRAFADALDATPMALAENSGLSPIDALSEVKARQVTENNP-----------N 159
+ S +Q + FA AL P LA N+ + ++++A N N
Sbjct: 435 LGSREQLAIAEFAQALLIIPRTLAVNAAKDSTELTAKLRAYHAASQNAEVTDVKKRGYKN 494
Query: 160 LGIDCMGNDSNDMKALNVIESLHSKKQQVALATQLVKMILKID 288
G+D + D V+E SK + + A + IL+ID
Sbjct: 495 YGLDLLNGVIRDNVKAGVLEPSMSKLKSLKSAVEACIAILRID 537
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 27.5 bits (58), Expect = 0.76
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +3
Query: 108 RRAFRGEGPTGDREQSKSWHRLYGQ*FKRHESLEC-NRIP 224
+RA+ E +G S W LY Q KR+ EC R+P
Sbjct: 263 QRAYGYEDASGKVLDSAEWLNLYSQLAKRYPKSECPTRLP 302
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 26.6 bits (56), Expect = 1.3
Identities = 21/79 (26%), Positives = 34/79 (43%)
Frame = +1
Query: 73 MALAENSGLSPIDALSEVKARQVTENNPNLGIDCMGNDSNDMKALNVIESLHSKKQQVAL 252
M EN DA+ V R+VT + +DC G D N +KA V + Q + +
Sbjct: 1038 MLTGENPEELQADAIVPVNVRRVTNRFVAVKLDC-GIDGN-IKADEVSDDFIPPPQLLQV 1095
Query: 253 ATQLVKMILKIDDVRSPAD 309
+ +I+ +D+ D
Sbjct: 1096 GQTVEGVIISLDEANFMVD 1114
>SPCP31B10.05 |||tyrosyl-DNA phosphodiesterase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 536
Score = 23.8 bits (49), Expect = 9.4
Identities = 7/13 (53%), Positives = 11/13 (84%)
Frame = -3
Query: 208 SRLSCRLNHCPYN 170
+RL+ ++NHCP N
Sbjct: 95 ARLTAQMNHCPVN 107
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 23.8 bits (49), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -2
Query: 173 QSMPRFGLFSVTCRAFTSESASIGDKPLFSANAIGVASSAS 51
+S +FG + R S+S PL+S A G+A S +
Sbjct: 202 ESSIKFGTYEAMKRVLGISSSSENHSPLYSYLAGGMAGSVA 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,281,715
Number of Sequences: 5004
Number of extensions: 21237
Number of successful extensions: 59
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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