Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E12
(623 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch... 360 e-100
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar... 353 2e-98
SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces... 149 2e-37
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|... 96 4e-21
SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate... 30 0.31
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 28 0.95
SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 26 3.8
SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces pombe... 26 3.8
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 26 5.1
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 25 6.7
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 6.7
SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 25 8.9
>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 455
Score = 360 bits (885), Expect = e-100
Identities = 160/205 (78%), Positives = 182/205 (88%)
Frame = +3
Query: 9 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 188
S+LTTH TL++SDC FMVDNEA YDICRRNLDIERPTY NLNRLI Q+VSSITASLRF G
Sbjct: 191 SVLTTHATLDNSDCTFMVDNEACYDICRRNLDIERPTYENLNRLIAQVVSSITASLRFAG 250
Query: 189 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCD 368
+LNVDL EFQTNLVPYPRIHFPLVTY+P++SA KA+HE SV EITN CFEP NQMVKCD
Sbjct: 251 SLNVDLNEFQTNLVPYPRIHFPLVTYSPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCD 310
Query: 369 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 548
PR G+YMA C+LYRGDV+P+DV AA+ +IK++RTIQFVDWCPTGFK+GI Y+PP VPG
Sbjct: 311 PRTGRYMATCLLYRGDVIPRDVQAAVTSIKSRRTIQFVDWCPTGFKIGICYEPPQHVPGS 370
Query: 549 DLAKVQRAVCMLSNTTAIAEAWARL 623
+AKV RAVCMLSNTT+IAEAW+RL
Sbjct: 371 GIAKVNRAVCMLSNTTSIAEAWSRL 395
>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 449
Score = 353 bits (867), Expect = 2e-98
Identities = 157/205 (76%), Positives = 180/205 (87%)
Frame = +3
Query: 9 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 188
S+LTTH TL+ +DC FMVDNE+ YDICRRNLDIERP+Y NLNRLI Q+VSSITASLRF+G
Sbjct: 187 SVLTTHATLDLADCTFMVDNESCYDICRRNLDIERPSYENLNRLIAQVVSSITASLRFEG 246
Query: 189 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCD 368
+LNVDL EFQTNLVPYPRIHFPLVTYAP++SA KA+HE SV EITN CFEP NQMVKCD
Sbjct: 247 SLNVDLAEFQTNLVPYPRIHFPLVTYAPIVSAAKAFHESNSVQEITNQCFEPYNQMVKCD 306
Query: 369 PRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGG 548
PR G+YMA C+LYRGDV+P+DV AA+ TIK KRTIQFVDWCPTGFK+GI +PP + G
Sbjct: 307 PRAGRYMATCLLYRGDVIPRDVQAAVTTIKAKRTIQFVDWCPTGFKIGICDRPPQHIEGS 366
Query: 549 DLAKVQRAVCMLSNTTAIAEAWARL 623
++AKV RAVCMLSNTT+IAEAW+RL
Sbjct: 367 EIAKVDRAVCMLSNTTSIAEAWSRL 391
>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 448
Score = 149 bits (362), Expect = 2e-37
Identities = 74/203 (36%), Positives = 117/203 (57%)
Frame = +3
Query: 15 LTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGAL 194
L+ H +E+SD F +DNEA+ I L I+ P+Y +LN L+ +++ +T S RF G L
Sbjct: 187 LSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGVTTSFRFPGEL 246
Query: 195 NVDLTEFQTNLVPYPRIHFPLVTYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPR 374
N DL + N+VP+PR+HF +V +AP+ + + + +SV E+T F+ N MV DPR
Sbjct: 247 NSDLRKLAVNMVPFPRLHFFMVGFAPLAAIGSSSFQAVSVPELTQQMFDANNMMVAADPR 306
Query: 375 HGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDL 554
HG+Y+ L+RG V K+V+ I +++TK + FV+W P + PP DL
Sbjct: 307 HGRYLTVAALFRGKVSMKEVDEQIRSVQTKNSAYFVEWIPDNVLKAVCSVPPK-----DL 361
Query: 555 AKVQRAVCMLSNTTAIAEAWARL 623
+ + + N+T+I E + RL
Sbjct: 362 ---KMSATFIGNSTSIQEIFRRL 381
>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 446
Score = 95.9 bits (228), Expect = 4e-21
Identities = 55/208 (26%), Positives = 104/208 (50%), Gaps = 4/208 (1%)
Frame = +3
Query: 9 SILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDG 188
S+L ++D ++DN A+ I L + PT+ N+L+ ++S+ T +LR+ G
Sbjct: 188 SLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSASTTTLRYPG 247
Query: 189 ALNVDLTEFQTNLVPYPRIHFPLVTYAPVIS---AEKAYHEQLSVAEITNACFEPANQMV 359
+N DL +L+P PR HF L +Y P + E + +V ++ P NQMV
Sbjct: 248 YMNNDLVSIIASLIPSPRCHFLLTSYTPFTNQQVEEAKAIRKTTVLDVMRRLLLPKNQMV 307
Query: 360 KCDP-RHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTV 536
+P + +++ + +G+ P DV+ ++ I+ +R F+ W P +V ++ + P +
Sbjct: 308 SVNPSKKSCFISILDIIQGEADPADVHKSLLRIRERRYASFIPWGPASIQVALSKKSPYI 367
Query: 537 VPGGDLAKVQRAVCMLSNTTAIAEAWAR 620
++ + ML+N T+IA + R
Sbjct: 368 KTNHRVSGL-----MLANHTSIASLFKR 390
>SPAC3F10.06c |||initiator methionine tRNA 2'-O-ribosyl phosphate
transferase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 453
Score = 29.9 bits (64), Expect = 0.31
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = +1
Query: 4 RGLSLQPTPPWNTPIVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYH 159
R LS+ + ++ S+ T KP + TW +N R P S+ + H
Sbjct: 23 RLLSIAHDAKFVDSVIASYPTFKPVVNERCGTWYVNRRHAPISVYFKSTDGH 74
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 28.3 bits (60), Expect = 0.95
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 321 ITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAI 446
+ ACFEP N C H K C L + KD N ++
Sbjct: 361 LCGACFEPINAKCYCG-LHSKTYPCSSLPSPSISKKDENGSV 401
>SPBC2D10.16 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 135
Score = 26.2 bits (55), Expect = 3.8
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = -1
Query: 200 DIEGAVETQRGGNR*YDLADKTIEVGVGRAFN 105
DIE E GN+ ++L +K I++ G+ FN
Sbjct: 58 DIEAFAEYALDGNKYFNLINKIIDMQDGKRFN 89
>SPCC18B5.08c |||isoleucine-tRNA ligase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 26.2 bits (55), Expect = 3.8
Identities = 16/67 (23%), Positives = 26/67 (38%)
Frame = +1
Query: 31 PWNTPIVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI*R 210
P+ W T KP + A W ++ + + + S +PP S A +
Sbjct: 419 PYKHRYPYDWRTHKPLILRATPQWFISLENERKTAIKALDSVKMIPP--NSRARLLGF-L 475
Query: 211 SSRPTWC 231
+ RP WC
Sbjct: 476 NGRPEWC 482
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = +1
Query: 103 ILNARPTPTSIVLSARSYHRL 165
I NAR T V S RSYHRL
Sbjct: 1499 IKNARAKLTKAVKSLRSYHRL 1519
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 452 GSDSRVDVLGHDVTAVQHAAGHVFAVT 372
G+D + GH V +Q A G VF+ T
Sbjct: 421 GADEKPKYAGHVVAVLQRAPGQVFSGT 447
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.4 bits (53), Expect = 6.7
Identities = 19/67 (28%), Positives = 30/67 (44%)
Frame = +1
Query: 28 PPWNTPIVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSYHRLPPLCVSTAPSMSI* 207
PPW ST S TS+ W A+P ++ + + + P +AP++S+
Sbjct: 407 PPWAAA-----STSVSSSTSSPAPW---AKPASSAAPSNPAPWQQ--PAAPQSAPALSMN 456
Query: 208 RSSRPTW 228
SS P W
Sbjct: 457 PSSLPPW 463
>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 675
Score = 25.0 bits (52), Expect = 8.9
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = +1
Query: 4 RGLSLQPTPPWNTPIVL 54
R + L P PPW+ P VL
Sbjct: 326 RQIQLNPFPPWDVPNVL 342
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,210
Number of Sequences: 5004
Number of extensions: 52831
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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