Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E12
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              26   0.34 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   4.2  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   7.4  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   7.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   9.8  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +2

Query: 119 LHQPQSSYRPDRIIDYRLSAFRRRPQCRSNGVPDQ 223
           LH  ++S +  +I+ Y  S  R++   + N +PD+
Sbjct: 164 LHMNRTSLKTSKIVSYPKSRSRKKGGLKDNLIPDK 198


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 399 MLYRGDVVPKDVNAAIAT 452
           M+Y G  V  D+NA IAT
Sbjct: 319 MMYLGTPVMPDLNALIAT 336


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/42 (23%), Positives = 16/42 (38%)
 Frame = +1

Query: 31  PWNTPIVLSWSTMKPSMTSAAVTWILNARPTPTSIVLSARSY 156
           P   P +L W+     +      W++   P P+   L A  Y
Sbjct: 14  PAGPPRLLGWNVPAEELIHIPEHWLVYPEPNPSLHYLLALLY 55


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 3   TRSILTTHTTLEHSDCAFMV 62
           T++ LTTH +L+H   + M+
Sbjct: 47  TKNSLTTHKSLQHRGSSGML 66


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -1

Query: 611 GLGDSGGIGQHADGALHLG 555
           GLG   G G+H  G   +G
Sbjct: 203 GLGVQNGYGRHLPGHAQMG 221


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,180
Number of Sequences: 438
Number of extensions: 3992
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)