Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E11
         (544 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF089726-1|AAG16773.1| 1090|Homo sapiens sodium bicarbonate cotr...    31   3.4  
AF053755-1|AAF21720.1| 1000|Homo sapiens bicarbonate transporter...    31   3.4  
AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate cotr...    31   3.4  
AB012130-1|BAA25898.1| 1018|Homo sapiens sodium bicarbonate cotr...    31   3.4  

>AF089726-1|AAG16773.1| 1090|Homo sapiens sodium bicarbonate
           cotransporter 2b protein.
          Length = 1090

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
 Frame = +2

Query: 263 ITP*ALTWR-LRQHSIVFLLSYFYGS---H*WTTIPNILIEC---Y*SNWF*ASFMKSFI 421
           IT   ++WR L       L   F GS   H    IP++L  C   + + +F +SF+K F 
Sbjct: 663 ITAHNISWRNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFK 722

Query: 422 T---------SAFAHCWAFSTIVIYVTPHTVISIPSPAL 511
           T         S  +    F TIVI VT   ++ +PSP L
Sbjct: 723 TKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKL 761


>AF053755-1|AAF21720.1| 1000|Homo sapiens bicarbonate transporter
           protein.
          Length = 1000

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
 Frame = +2

Query: 263 ITP*ALTWR-LRQHSIVFLLSYFYGS---H*WTTIPNILIEC---Y*SNWF*ASFMKSFI 421
           IT   ++WR L       L   F GS   H    IP++L  C   + + +F +SF+K F 
Sbjct: 573 ITAHNISWRNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFK 632

Query: 422 T---------SAFAHCWAFSTIVIYVTPHTVISIPSPAL 511
           T         S  +    F TIVI VT   ++ +PSP L
Sbjct: 633 TKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKL 671


>AF047033-1|AAD38322.1| 1214|Homo sapiens sodium bicarbonate
            cotransporter 3 protein.
          Length = 1214

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
 Frame = +2

Query: 263  ITP*ALTWR-LRQHSIVFLLSYFYGS---H*WTTIPNILIEC---Y*SNWF*ASFMKSFI 421
            IT   ++WR L       L   F GS   H    IP++L  C   + + +F +SF+K F 
Sbjct: 787  ITAHNISWRNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFK 846

Query: 422  T---------SAFAHCWAFSTIVIYVTPHTVISIPSPAL 511
            T         S  +    F TIVI VT   ++ +PSP L
Sbjct: 847  TKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKL 885


>AB012130-1|BAA25898.1| 1018|Homo sapiens sodium bicarbonate
           cotransporter2 protein.
          Length = 1018

 Score = 30.7 bits (66), Expect = 3.4
 Identities = 32/99 (32%), Positives = 45/99 (45%), Gaps = 16/99 (16%)
 Frame = +2

Query: 263 ITP*ALTWR-LRQHSIVFLLSYFYGS---H*WTTIPNILIEC---Y*SNWF*ASFMKSFI 421
           IT   ++WR L       L   F GS   H    IP++L  C   + + +F +SF+K F 
Sbjct: 573 ITAHNISWRNLTVSECKKLRGVFLGSACGHHGPYIPDVLFWCVILFFTTFFLSSFLKQFK 632

Query: 422 T---------SAFAHCWAFSTIVIYVTPHTVISIPSPAL 511
           T         S  +    F TIVI VT   ++ +PSP L
Sbjct: 633 TKRYFPTKVRSTISDFAVFLTIVIMVTIDYLVGVPSPKL 671


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,749,487
Number of Sequences: 237096
Number of extensions: 1244690
Number of successful extensions: 1263
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1263
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)