Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E11
         (544 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical...    28   3.8  
AF045646-8|AAK29830.1|  541|Caenorhabditis elegans Udp-glucurono...    28   5.0  
AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical ...    27   6.6  

>AF106575-11|AAC78166.1|  329|Caenorhabditis elegans Hypothetical
           protein K04F1.7 protein.
          Length = 329

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 182 FKIYSKTIIECNITEFRNDVCENRILFTRKKLNFNSLA 69
           F I S T  + +I+EF +  CE+R  F  + LN  + A
Sbjct: 22  FNIISLTATQADISEFFDSHCESRCNFLEEHLNSKTKA 59


>AF045646-8|AAK29830.1|  541|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein52 protein.
          Length = 541

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 256 TSDYPLSTNLAFTPAFHCFPIVLFLW-VTLMDDDSKYF 366
           +S +P+    AF  AF  FP   F+W   + D D + F
Sbjct: 316 SSLFPIEVRRAFAQAFRHFPDFTFVWKYEMQDGDEQIF 353


>AL117193-7|CAB60301.2|  346|Caenorhabditis elegans Hypothetical
           protein Y105C5A.11 protein.
          Length = 346

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 28/109 (25%), Positives = 51/109 (46%), Gaps = 1/109 (0%)
 Frame = +1

Query: 13  IIT*VIY*YNK*CVIFKSIAKELKFSFLRVNNIRFSQTSFRN-SVILHSIIVFE*ILNL* 189
           I+T + +  N  C+ FK+++ ++  SF R+  + F    F+    IL  ++V   +L L 
Sbjct: 113 ILTKLYFLLNHYCLAFKTLS-QIAISFNRMTCVIFPVQHFKLWQNILAPVLVSLFVLPLG 171

Query: 190 FGFVIL*I*FAISQF*KN*LMDTSDYPLSTNLAFTPAFHCFPIVLFLWV 336
             + IL     I+       ++  D     N++F   FHC P +L + V
Sbjct: 172 VTWNILVSRVYINPNGAGFSVNYRDAVAWANISFLHLFHCIPCLLLVIV 220


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,944,748
Number of Sequences: 27780
Number of extensions: 209052
Number of successful extensions: 375
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 375
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1091917214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)