Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E08
         (400 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|c...    29   0.27 
SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1 |Schizosacch...    26   1.9  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    25   5.7  
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S...    24   7.6  
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|...    24   10.0 
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    24   10.0 
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    24   10.0 
SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|ch...    24   10.0 

>SPAC922.05c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.27
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 202 LTIR*KNFIISYQSYRLECFALLFYQSLVCDGVMWRELYVTQD 330
           +T R     I Y +Y   C+ALL    +V   V+W+++ +T +
Sbjct: 438 ITYRMDTLNIPYMNYFASCWALLCGSLIVASPVIWKKIKLTTE 480


>SPAC2F3.15 |lsk1||latrunculin sensitive kinase Lsk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 1.9
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +3

Query: 228 NIVSKLPIRMFCVTVLPEFGMRWRDVARTIRNSRLAMTPSNIARVMCKHVSKMV 389
           NIV  L I +   +V   F     D+   + NS+L  TP NI     KH+SK +
Sbjct: 335 NIVRLLEIMVEKSSVYMVFEYMDHDLTGVLLNSQLHFTPGNI-----KHLSKQI 383


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 212 LIVRIFHDDYFVLHIHKP 159
           ++ + F +D+F++HIH P
Sbjct: 208 IVSQFFMNDHFLVHIHHP 225


>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 16/51 (31%), Positives = 27/51 (52%)
 Frame = -1

Query: 364 ITRAIFDGVIANLELRIVRATSRHRIPNSGRTVTQNILIGSFDTIL*SSFI 212
           IT A+F   +++L+   VRA+ +   PN+  T  +  LI   +  L +S I
Sbjct: 284 ITEAVFARCLSSLKSERVRASKKLTGPNTKFTGDKKQLIDDLEDALYASKI 334


>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1234

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
 Frame = +1

Query: 52  VLFSLLFLWYRRCVEINIYGK---TNLFEINILF 144
           ++   LFLW ++ VEIN       T L  + +LF
Sbjct: 543 IILQNLFLWCKQLVEINFKDPMLITRLISVLVLF 576


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 180 KIIIMEYSNNQIKELHNIVSKLP 248
           K  +  YS NQ+KE+  I + +P
Sbjct: 372 KDYLPNYSKNQLKEMREIANGIP 394


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -3

Query: 221  FFYLIVRIFHDDYFVLHIHKPPYYA*NNIFISNKFV 114
            FF+L+     + +FV +I K P       FI +KF+
Sbjct: 1103 FFWLLFLYAKNGFFVQNISKWPIIPRMKYFIKHKFL 1138


>SPBC20F10.10 |||cyclin pho85 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 23.8 bits (49), Expect = 10.0
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 2/86 (2%)
 Frame = -1

Query: 307 ATSRHRIPNSGRTVTQNILIGSFDTIL*SSFI*LLEYSMMIILYYTYTSHHTMRKIIYLF 128
           AT   +IP S  ++    LI S   +     I +  Y   I+ Y   T+   +  +IYL 
Sbjct: 52  ATESDQIPLSPTSLKNPCLIFSAKNV---PSISIQAYLTRILKYCPATNDVFLSVLIYLD 108

Query: 127 QINSFFHKYLFLH--NVYTTEITG*T 56
           +I   FH  +F++  N++   I G T
Sbjct: 109 RIVHHFHFTVFINSFNIHRFLIAGFT 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,042
Number of Sequences: 5004
Number of extensions: 37155
Number of successful extensions: 67
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)