Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E08
         (400 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0098 + 744582-745380,746107-746130,746500-747569                 30   0.77 
01_01_1127 + 8930593-8932681,8932812-8933401                           29   1.4  
10_08_0520 - 18495118-18498237                                         28   2.4  
01_01_0108 + 793499-794413                                             28   3.1  
11_04_0439 + 17749634-17749858,17750164-17750301,17750770-177509...    27   4.1  
01_01_0095 + 733307-734060,734779-734802,735029-736098                 26   9.5  

>01_01_0098 + 744582-745380,746107-746130,746500-747569
          Length = 630

 Score = 29.9 bits (64), Expect = 0.77
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -1

Query: 187 IILYYTYTSHHTMRKIIYLFQINSFFHKYLFLHNVYTTE 71
           II    + S  T R +IY F  N    KY+FLH+  T +
Sbjct: 388 IIHLLGFCSEGTRRALIYEFMPNESLEKYIFLHDHNTPQ 426


>01_01_1127 + 8930593-8932681,8932812-8933401
          Length = 892

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 261 CVTVLPEFGMRWRDVARTIRNSRLAM 338
           CV   P+ G RW+ +A+ + NS L++
Sbjct: 845 CVASEPKHGERWQAIAKAVENSHLSI 870


>10_08_0520 - 18495118-18498237
          Length = 1039

 Score = 28.3 bits (60), Expect = 2.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = +3

Query: 261  CVTVLPEFGMRWRDVARTIRNSRLAM 338
            CV   P+ G RW+ + + + NS L++
Sbjct: 992  CVAAEPKHGERWQAITKAVENSHLSI 1017


>01_01_0108 + 793499-794413
          Length = 304

 Score = 27.9 bits (59), Expect = 3.1
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 196 SMMIILYYTYTSHHTMRKIIYLFQINSFFHKYLFLHNVYTTE 71
           S+ I+    + S  T   +IY F  N    KY+F H+  T++
Sbjct: 59  SVNIVRLLGFCSEGTRHILIYEFMPNESLEKYIFFHDPNTSQ 100


>11_04_0439 +
           17749634-17749858,17750164-17750301,17750770-17750943,
           17751099-17751184,17751264-17751525,17751616-17751815,
           17753631-17754086,17754198-17754474,17754694-17754828,
           17754946-17755026,17756305-17756400,17756676-17756771,
           17756844-17756900,17756975-17757043,17757158-17757237,
           17758185-17758329,17758422-17758511,17758914-17758994,
           17759103-17759198,17759279-17759335,17759417-17759461,
           17759547-17759612,17760304-17760350,17762771-17762865,
           17763375-17763393,17763438-17763498,17763637-17763660
          Length = 1085

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = -1

Query: 190 MIILYYTYTSHHTMRKIIYLFQINSFFHKYL--FLHNVYTTEITG*TKQRC 44
           MI+  Y YTS   ++ ++++++I   F  YL  ++  ++  +  G T + C
Sbjct: 630 MIVARYKYTSSDELQDMVWIWEIEEEFIAYLHTYVDMLHKVDEIGDTMEDC 680


>01_01_0095 + 733307-734060,734779-734802,735029-736098
          Length = 615

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = -1

Query: 187 IILYYTYTSHHTMRKIIYLFQINSFFHKYLFLHNVYTTEI 68
           I+    + S  T R ++Y    N    KY+FL +  T E+
Sbjct: 374 IVRLLGFCSEGTRRALVYELMPNESLEKYIFLRDPNTQEL 413


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,876,569
Number of Sequences: 37544
Number of extensions: 199579
Number of successful extensions: 366
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)