Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E08
         (400 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine r...    31   0.30 
AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like nucl...    30   0.53 
AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical ...    30   0.53 
AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical ...    30   0.53 
AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical ...    30   0.70 
Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical pr...    29   1.6  
Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical pr...    27   6.5  
Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical p...    27   6.5  
U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane r...    26   8.7  
AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell...    26   8.7  
AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell...    26   8.7  

>AC024826-13|AAF60794.2|  305|Caenorhabditis elegans Serpentine
           receptor, class x protein12 protein.
          Length = 305

 Score = 31.1 bits (67), Expect = 0.30
 Identities = 28/79 (35%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
 Frame = +1

Query: 106 YGKTNLFEINILFYA*YGGLCMCSTK*SSWNILTIR*KNFIISYQSYRLECFALLFYQSL 285
           +GK  L +INILF+      C      SS   LTI     + S  +YR  CF + F  S+
Sbjct: 80  FGKI-LGQINILFW---NACCYSHLVISSNRFLTISMPTKVSSLFNYRNTCFIIAFVWSM 135

Query: 286 VCDGVM---WRE-LYVTQD 330
               V+   WRE  YV  D
Sbjct: 136 AIGHVIPYFWRETCYVAYD 154


>AF162674-1|AAF80462.1|  575|Caenorhabditis elegans CNT-like
           nucleoside transporter protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 141 ILRIVWWLVYV*YKIIIMEYSNNQIKELHNIVSKLPIRMFCVTVL 275
           + R+  +  YV Y + +  +SNN++K   ++VS   I  +CV ++
Sbjct: 144 LTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYCVALI 188


>AF016413-4|AAM29683.1|  454|Caenorhabditis elegans Hypothetical
           protein F27E11.2b protein.
          Length = 454

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 141 ILRIVWWLVYV*YKIIIMEYSNNQIKELHNIVSKLPIRMFCVTVL 275
           + R+  +  YV Y + +  +SNN++K   ++VS   I  +CV ++
Sbjct: 144 LTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYCVALI 188


>AF016413-3|AAB65256.3|  555|Caenorhabditis elegans Hypothetical
           protein F27E11.2a protein.
          Length = 555

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +3

Query: 141 ILRIVWWLVYV*YKIIIMEYSNNQIKELHNIVSKLPIRMFCVTVL 275
           + R+  +  YV Y + +  +SNN++K   ++VS   I  +CV ++
Sbjct: 144 LTRLTGFFAYVFYILFMFVFSNNRMKINWSVVSSALIMHYCVALI 188


>AL031630-5|CAA20985.1|  915|Caenorhabditis elegans Hypothetical
           protein Y38H6C.5 protein.
          Length = 915

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 309 APHHAIAYQTLVEQ*RKTF*SVALIRYYEVLLSDC 205
           A +  + ++ LVE+ RKTF +  LIR+ E  L  C
Sbjct: 273 AKNQVVNFEELVEELRKTFDNAVLIRHREQQLRQC 307


>Z68120-4|CAA92202.1|  328|Caenorhabditis elegans Hypothetical
           protein T24C2.4 protein.
          Length = 328

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 13/60 (21%), Positives = 30/60 (50%)
 Frame = +3

Query: 177 YKIIIMEYSNNQIKELHNIVSKLPIRMFCVTVLPEFGMRWRDVARTIRNSRLAMTPSNIA 356
           ++  ++++S +   ++ +I+ K P  +FC    P + +   D+AR     + A    NI+
Sbjct: 239 FQTFVVDFSVDDAIKIRDILLKSPNFIFCHLDFPPYSLNLNDIARVFCPGQDATDEENIS 298


>Z82260-1|CAB05140.1|  332|Caenorhabditis elegans Hypothetical
           protein C32H11.2 protein.
          Length = 332

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = -3

Query: 236 YDIMKFFYLIVR--IFHDDYFVLHIHKPPYYA*NNIFISNKFVFP*IFISTQRLYH 75
           Y IMKF Y I    +    Y V  + +P     +NI + N FVF  IF+S   LY+
Sbjct: 64  YKIMKFTYWITLSLVLAMYYTVYQLDRPK----SNIPLINIFVFLIIFLSMCMLYY 115


>Z81147-11|CAL69739.1|  323|Caenorhabditis elegans Hypothetical
           protein T09E11.12 protein.
          Length = 323

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 61  SLLFLWYRRCVEINIYGKTNLFEINILFYA*YGGL 165
           S+   W RRC     + KT L  +NI +   Y  L
Sbjct: 97  SIASTWLRRCDNGRFFSKTPLLNLNITYSTVYKNL 131


>U43316-1|AAC46993.1|  525|Caenorhabditis elegans transmembrane
           receptor protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 243 LPIRMFCVTVLPEFGMRWRDVAR 311
           L ++  C+ VL  FG +W DV R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


>AC006736-2|AAF60493.1|  529|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform b protein.
          Length = 529

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 243 LPIRMFCVTVLPEFGMRWRDVAR 311
           L ++  C+ VL  FG +W DV R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


>AC006736-1|AAF60492.1|  525|Caenorhabditis elegans Abnormal cell
           migration protein1, isoform a protein.
          Length = 525

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 243 LPIRMFCVTVLPEFGMRWRDVAR 311
           L ++  C+ VL  FG +W DV R
Sbjct: 103 LSVQEKCLPVLESFGFKWPDVIR 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,020,604
Number of Sequences: 27780
Number of extensions: 207307
Number of successful extensions: 461
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 461
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)