Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E07
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    27   0.87 
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual      27   1.5  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    26   2.7  
SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein Utp5|Schiz...    25   3.5  
SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr 2...    25   6.1  
SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces...    25   6.1  
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm...    25   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   8.1  

>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 27.5 bits (58), Expect = 0.87
 Identities = 15/43 (34%), Positives = 21/43 (48%)
 Frame = +2

Query: 254  PYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSSNISEIN 382
            PY    R+    +GN  R+  + GD L I+ TD  S  +  IN
Sbjct: 1987 PYEINLRIIERSSGNDWRSSLSPGDSLPILHTDSKSFLLMGIN 2029


>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = +2

Query: 74  DDIFSKMDEDEMRML-SDEPNSSRDF 148
           +D+FS   EDE R L +DE    RDF
Sbjct: 64  EDMFSDTSEDEKRTLPNDEAQKRRDF 89


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 260 RSQARVKRIENGNIRRTVTNVGD-ELSIIRTDYLSSN 367
           R  AR+ R +NG   R +T  GD + S +  DYL ++
Sbjct: 42  RKFARISRGKNGYENRKITEEGDSKSSELNDDYLDAH 78


>SPAC20H4.01 ||SPAC631.03|U3 snoRNP-associated protein
           Utp5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 666

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 74  DDIFSKMDEDEMRMLSDEPNSSRDFSIGFGYYPGCVGDNREPANRSSG 217
           D+ +S  D  +  M SDE NSS+      G +P    +NRE +   SG
Sbjct: 615 DEGYSSDDSVDNEMYSDEENSSK------GAFPDEENENRELSEDYSG 656


>SPBC12D12.06 |srb11||cyclin CycC|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 228

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 305 RTVTNVGDELSIIRTDYLSSNISEINWFVRILLD 406
           RT+ N  ++L  ++     SNISEI + +  +LD
Sbjct: 97  RTICNEANDLWSLKVKLSRSNISEIEFEIISVLD 130


>SPAC20H4.07 |rhp57||RecA family ATPase Rhp57|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 354

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 268 LTPIRFRASRVGSKYIST 215
           L P+R  AS+V SKY++T
Sbjct: 60  LQPVRCSASKVTSKYLTT 77


>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1292

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 10/45 (22%), Positives = 25/45 (55%)
 Frame = +3

Query: 111 ECSRMSQIQAEISLLVLAITLDALVITENLPIVVLVLIYLDPTRL 245
           + S  ++ Q  + +L++++TL  + + E LP+ V + +     R+
Sbjct: 476 DSSSKNKGQEFLQILIVSVTLLVVAVPEGLPLAVTLALAFATNRM 520


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = +2

Query: 287  ENGNIRRTVTNVGDELSIIRTDYLSSNISEINW 385
            EN NI    TN G+EL       L  N   ++W
Sbjct: 1667 ENTNINGCTTNEGNELLFDNPICLLDNTQPLHW 1699


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,622,648
Number of Sequences: 5004
Number of extensions: 31254
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)