Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E07
(414 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_05_0014 + 18392622-18392834,18393064-18393147,18393709-183937... 34 0.052
03_02_0124 - 5749183-5749773,5750628-5751160,5751191-5753035,575... 31 0.28
11_06_0559 + 24972403-24972445,24972590-24972680,24973911-249740... 30 0.64
05_06_0228 + 26570066-26571352 30 0.84
01_02_0078 - 10894871-10895841,10897268-10898426 29 1.5
06_01_1138 - 9429447-9433868 29 1.9
05_07_0251 - 28677293-28677748,28677891-28678217 27 5.9
02_02_0670 + 12787817-12787876,12788129-12788388,12788869-127892... 27 7.8
02_01_0570 - 4195409-4195443,4196245-4196333,4196539-4196630,419... 27 7.8
01_01_0104 + 780442-781273,782514-783424 27 7.8
>11_05_0014 +
18392622-18392834,18393064-18393147,18393709-18393797,
18393889-18394063,18394370-18394489,18394591-18394677,
18394755-18394826,18395166-18395279,18395387-18395487,
18395576-18395669,18395794-18395961,18396287-18396352,
18396475-18396531,18396708-18396927,18397015-18397151,
18397573-18397641,18397722-18397781,18397927-18397998,
18398171-18398218,18398376-18398495,18398743-18398808,
18399341-18399453,18399821-18399905,18400246-18400356,
18400436-18400531,18401075-18401143,18401235-18401453
Length = 974
Score = 33.9 bits (74), Expect = 0.052
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 1/91 (1%)
Frame = +2
Query: 143 DFSIGFGYYPGCVGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIENGNIRRTVTNV 322
+F + YY G G+ +P ++SGAYIFRP+ T P Q + + + +
Sbjct: 603 NFEQKYKYYIGQDGNGSDP--QASGAYIFRPNGTVPIKTDGQVPLTVLRGSILDEVHQQI 660
Query: 323 GDELSIIRTDYLSSNISEINWFV-RILLDDG 412
+ I Y + E + V I +DDG
Sbjct: 661 NPWIYQINRVYKGKDYVETEFIVGPIPVDDG 691
>03_02_0124 -
5749183-5749773,5750628-5751160,5751191-5753035,
5753632-5753820,5753911-5754013,5754087-5754269,
5754392-5754484,5755031-5755219,5756133-5756327
Length = 1306
Score = 31.5 bits (68), Expect = 0.28
Identities = 15/67 (22%), Positives = 31/67 (46%)
Frame = +2
Query: 122 DEPNSSRDFSIGFGYYPGCVGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIENGNI 301
D+ N+ ++ +GF Y G + + + + + P+S S P+ Q + +NG +
Sbjct: 714 DDGNNWHEYGVGFPRYFNHQGRDPQMRHFNGKEHSSSPNSVSGAPFERQGEIAVEDNGAV 773
Query: 302 RRTVTNV 322
TN+
Sbjct: 774 EENYTNM 780
>11_06_0559 +
24972403-24972445,24972590-24972680,24973911-24974030,
24974121-24974237,24974745-24974840,24975317-24975610,
24977153-24977258,24977365-24977566,24977671-24977792
Length = 396
Score = 30.3 bits (65), Expect = 0.64
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +2
Query: 164 YYPGCVGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIENGNIRRTVTNVG 325
+ PGC +R P R S Y RP + + Q++ K ++ N+ + +G
Sbjct: 45 WIPGCASADRRPRVRQSVLYSDRPKRSQGIRGQVQSKTKSLDEKNVSEVSSELG 98
>05_06_0228 + 26570066-26571352
Length = 428
Score = 29.9 bits (64), Expect = 0.84
Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Frame = +2
Query: 5 RTINKEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEM--RMLSDEPNSSRDFSIGFGYYPG 175
R KEKF T + ++ +S++D DE+ RML SR + G G YPG
Sbjct: 304 RVFQKEKFNTVEEDEPSQNRSAHFEYYWSELDLDELDGRMLFVGRGCSRSYEAGDGRYPG 363
>01_02_0078 - 10894871-10895841,10897268-10898426
Length = 709
Score = 29.1 bits (62), Expect = 1.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = +2
Query: 5 RTINKEKFVT-DXXXXXXXXXXKYDDIFSKMDEDEMRMLSDEPNSSRDFSIGFGYYPG 175
R K+KF T + ++ +S++DE + RML SR + G G YPG
Sbjct: 298 RVFQKKKFNTGEEDEPSQNRSAHFEYYWSELDELDGRMLFVGLGCSRSYKAGDGRYPG 355
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.7 bits (61), Expect = 1.9
Identities = 16/41 (39%), Positives = 19/41 (46%)
Frame = +2
Query: 224 IFRPDSTSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIR 346
+F P ST P P QA + +IR V N L IIR
Sbjct: 428 MFPPASTKPPPQSEQAAASTLGEDHIREIVHNHKITLEIIR 468
>05_07_0251 - 28677293-28677748,28677891-28678217
Length = 260
Score = 27.1 bits (57), Expect = 5.9
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 179 VGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIENGNIRRTVTNVGDELS 337
V E NR+ P+++S + ++ ++G IR +TNVGD+L+
Sbjct: 136 VETENEKVNRAPTTIDLDPETSSASKPKKAKTIESEDDGLIR-AITNVGDKLA 187
>02_02_0670 +
12787817-12787876,12788129-12788388,12788869-12789205,
12789457-12789549
Length = 249
Score = 26.6 bits (56), Expect = 7.8
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = -2
Query: 221 KHQNYDWQVLCYHQRIQGNSQNQ*RNLCLNLAHPRAFSFRLHPFSKICHRI 69
K Q DW Y +++ + RNL L HP +F LH F C R+
Sbjct: 74 KDQILDWSDWIY-LKVEPEDE---RNLALWPKHPSSFRDALHEFVVRCRRV 120
>02_01_0570 -
4195409-4195443,4196245-4196333,4196539-4196630,
4196726-4196833,4196984-4197118,4197211-4197256,
4197358-4197458,4198285-4198422,4198503-4198601,
4198740-4198856,4199195-4199356,4199734-4199793,
4200371-4200538,4200608-4200718,4201401-4201499,
4201579-4201644,4202407-4202490,4202563-4202605,
4202684-4202739,4202817-4202925,4203442-4203524,
4203842-4203925,4204311-4204382,4204462-4204539,
4204633-4204716,4204806-4204876,4205943-4206012,
4206495-4206626,4207168-4207284,4208185-4208367
Length = 963
Score = 26.6 bits (56), Expect = 7.8
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +3
Query: 105 K*ECSRMSQIQAEISLLVLAITLDALVITENLPI-VVLVLIY 227
K + S S I I +L +A+T+ + + E LP+ V L L Y
Sbjct: 342 KGQTSVKSTIFGTIKILTIAVTIVVVAVPEGLPLAVTLTLAY 383
>01_01_0104 + 780442-781273,782514-783424
Length = 580
Score = 26.6 bits (56), Expect = 7.8
Identities = 16/42 (38%), Positives = 17/42 (40%)
Frame = +2
Query: 167 YPGCVGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIEN 292
Y GC R PA S + F P TSP PY EN
Sbjct: 127 YHGCNLYRRIPAKIVSCSKEFTPSGTSPVPYELDHLQNAAEN 168
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,734,967
Number of Sequences: 37544
Number of extensions: 178247
Number of successful extensions: 425
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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