Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E07
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical ...    29   1.3  
AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical ...    29   1.3  
U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical pr...    29   1.8  
AC006828-1|AAM48561.2|   55|Caenorhabditis elegans Hypothetical ...    27   5.4  
Z92832-3|CAB07372.1|  333|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z82256-4|CAB05118.1|  636|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical pr...    26   9.4  
Z68006-2|CAA91996.1|  560|Caenorhabditis elegans Hypothetical pr...    26   9.4  

>AC025726-9|AAK73924.1|  594|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23a protein.
          Length = 594

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  YDDIFSKMDEDEMRMLSDEPNSS 139
           YDD F + DED++  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>AC025726-8|AAT81183.1|  537|Caenorhabditis elegans Hypothetical
           protein Y71G12B.23b protein.
          Length = 537

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 71  YDDIFSKMDEDEMRMLSDEPNSS 139
           YDD F + DED++  LS +P  S
Sbjct: 153 YDDDFEQEDEDDLEWLSSQPGGS 175


>U40948-5|AAA81731.2|  955|Caenorhabditis elegans Hypothetical
           protein F55D10.1 protein.
          Length = 955

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 22/78 (28%), Positives = 30/78 (38%)
 Frame = +2

Query: 158 FGYYPGCVGDNREPANRSSGAYIFRPDSTSPEPYRSQARVKRIENGNIRRTVTNVGDELS 337
           F YY G    + +P    SGAYIFRP +  P    S+  ++ +    I      V   +S
Sbjct: 608 FFYYEGIDSKDDQP----SGAYIFRPKTQQPIALTSKLALEVVPGAIINEVRQKVSPFVS 663

Query: 338 IIRTDYLSSNISEINWFV 391
                    N  E  W V
Sbjct: 664 QQIRLPRGKNYIEFEWIV 681


>AC006828-1|AAM48561.2|   55|Caenorhabditis elegans Hypothetical
           protein Y97E10C.1 protein.
          Length = 55

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +2

Query: 131 NSSRDFSIGFGYYPGCVGDNREPANRSS 214
           N     SI F  YPG + D   P++RSS
Sbjct: 22  NEESTTSIFFDIYPGRIADAHHPSSRSS 49


>Z92832-3|CAB07372.1|  333|Caenorhabditis elegans Hypothetical
           protein F31D4.4 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/48 (25%), Positives = 21/48 (43%)
 Frame = +2

Query: 242 TSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSSNISEINW 385
           ++P+P      ++     N    + N  +E SI+R  +   N S  NW
Sbjct: 36  SAPQPAEFSEALEYCTQSNASLVIINSEEEASIVREFFARENPSFFNW 83


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical protein
            F52G2.2a protein.
          Length = 1319

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/62 (19%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 184  TNASRVIAKTNR-EISA*IWLIREHSHFVFIHFRKYVIVFRPFPASSTFFISNEFLFVYR 8
            +NA   ++  +R E+   +  + +++  V++  +K   +      S +  + N ++F+YR
Sbjct: 907  SNAGTSVSSVDRKEVGVVMKKVDKNTQIVYLSGQKAAAIHHWNTHSQSTIVGNSYIFMYR 966

Query: 7    PL 2
            P+
Sbjct: 967  PI 968


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
           protein F52G2.2b protein.
          Length = 1129

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/62 (19%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = -3

Query: 184 TNASRVIAKTNR-EISA*IWLIREHSHFVFIHFRKYVIVFRPFPASSTFFISNEFLFVYR 8
           +NA   ++  +R E+   +  + +++  V++  +K   +      S +  + N ++F+YR
Sbjct: 717 SNAGTSVSSVDRKEVGVVMKKVDKNTQIVYLSGQKAAAIHHWNTHSQSTIVGNSYIFMYR 776

Query: 7   PL 2
           P+
Sbjct: 777 PI 778


>Z99273-1|CAB16477.1|  645|Caenorhabditis elegans Hypothetical
           protein Y45F10C.1 protein.
          Length = 645

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 72  TMTYFRKWMKTK*ECSRMSQIQAEISLL 155
           T+T+F KWMK     S + +++ EI  L
Sbjct: 591 TLTHFLKWMKVPLLASFLKKVEEEIEKL 618


>Z82256-4|CAB05118.1|  636|Caenorhabditis elegans Hypothetical
           protein B0513.6 protein.
          Length = 636

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 72  TMTYFRKWMKTK*ECSRMSQIQAEISLL 155
           T+T+F KWMK     S + +++ EI  L
Sbjct: 582 TLTHFLKWMKVPLLASFLKKVEEEIEKL 609


>Z79694-4|CAB01963.1|  398|Caenorhabditis elegans Hypothetical
           protein C15A11.4 protein.
          Length = 398

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 112 SHFVFIHFRKYVIVFRPF 59
           S FVFI +RK+V V  PF
Sbjct: 54  SDFVFIKYRKFVAVLIPF 71


>Z68006-2|CAA91996.1|  560|Caenorhabditis elegans Hypothetical
           protein K09C8.3 protein.
          Length = 560

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 11/42 (26%), Positives = 24/42 (57%)
 Frame = +2

Query: 239 STSPEPYRSQARVKRIENGNIRRTVTNVGDELSIIRTDYLSS 364
           STSP PY   + +  ++  ++R  ++ + ++ + IR  Y +S
Sbjct: 327 STSPIPYTFDSSLDNLDQNDVRGAISEI-EQKTCIRFKYFAS 367


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,767,368
Number of Sequences: 27780
Number of extensions: 169999
Number of successful extensions: 445
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)