Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E06
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    23   4.0  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    23   4.0  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    23   7.1  
SPAC23D3.08 |usp108||U1 snRNP-associated protein Usp108|Schizosa...    22   9.3  
SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2 |Sch...    22   9.3  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    22   9.3  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -2

Query: 134 HSSFWPTQWDW 102
           H S WP+ W W
Sbjct: 186 HLSSWPSNWKW 196


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +3

Query: 66  GAIIKPKSIW-TLPVPLCWPKRRMVNIDYASIIE 164
           G +  P   W  +P+P     ++ VN+D+ S +E
Sbjct: 30  GVMFDPGVPWYNIPLPELHEDKKFVNVDHVSELE 63


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -2

Query: 164 FDNRRIVDIYHSSFW 120
           F   R++DIYH   W
Sbjct: 541 FPKHRMIDIYHGHGW 555


>SPAC23D3.08 |usp108||U1 snRNP-associated protein
           Usp108|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 382

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 7/27 (25%), Positives = 17/27 (62%)
 Frame = +3

Query: 24  LVGSPVCCSEFRH*GAIIKPKSIWTLP 104
           + GSP   ++F H  +++ P++ + +P
Sbjct: 201 IYGSPSTFTQFNHMSSMVTPENPYGIP 227


>SPAPB17E12.04c |csn2||COP9/signalosome complex subunit Csn2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 437

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +1

Query: 112 CVGQKEEW*ISTMRRLSKI 168
           C G++ EW    +++++KI
Sbjct: 60  CEGEQNEWAFKALKQITKI 78


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 9/31 (29%), Positives = 14/31 (45%)
 Frame = +1

Query: 40   CAAVNSGTEGQLLNPSQSGLCQSHCVGQKEE 132
            C    S + G   NP    LC+   + +K+E
Sbjct: 1161 CLLSKSQSSGDTNNPKSFQLCKIQSISRKKE 1191


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 832,121
Number of Sequences: 5004
Number of extensions: 14311
Number of successful extensions: 27
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)