Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E06
(180 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X91247-1|CAA62629.1| 497|Homo sapiens thioredoxin reductase (NA... 30 1.5
S79851-1|AAB35418.1| 497|Homo sapiens thioredoxin reductase pro... 30 1.5
D88687-1|BAA13674.1| 549|Homo sapiens KM-102-derived reductase-... 30 1.5
DQ157758-1|AAZ67916.1| 497|Homo sapiens thioredoxin reductase 1... 30 1.5
CR536506-1|CAG38744.1| 497|Homo sapiens TXNRD1 protein. 30 1.5
BT019640-1|AAV38446.1| 497|Homo sapiens thioredoxin reductase 1... 30 1.5
BC018122-1|AAH18122.2| 499|Homo sapiens thioredoxin reductase 1... 30 1.5
AY057105-1|AAL15432.1| 647|Homo sapiens thioredoxin reductase 1... 30 1.5
AK128515-1|BAC87474.1| 581|Homo sapiens protein ( Homo sapiens ... 30 1.5
AJ001050-1|CAA04503.1| 497|Homo sapiens thioredoxin reductase p... 30 1.5
AF208018-1|AAF15900.1| 497|Homo sapiens thioredoxin reductase p... 30 1.5
AF077367-1|AAC69621.1| 497|Homo sapiens thioredoxin reductase G... 30 1.5
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 29 3.5
DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase p... 28 4.7
DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein. 28 4.7
AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein. 28 4.7
AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein. 28 4.7
AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein pro... 28 4.7
AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein pro... 28 4.7
AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein... 28 4.7
AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein pro... 28 4.7
AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein. 28 4.7
AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein. 28 4.7
AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein. 28 4.7
AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein. 28 4.7
AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein. 28 4.7
AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein. 28 4.7
AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein. 28 4.7
>X91247-1|CAA62629.1| 497|Homo sapiens thioredoxin reductase
(NADPH) protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>S79851-1|AAB35418.1| 497|Homo sapiens thioredoxin reductase
protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>D88687-1|BAA13674.1| 549|Homo sapiens KM-102-derived
reductase-like factor protein.
Length = 549
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 451 IEVYHSYFWPLEWTIPSRD 469
>DQ157758-1|AAZ67916.1| 497|Homo sapiens thioredoxin reductase 1
protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>CR536506-1|CAG38744.1| 497|Homo sapiens TXNRD1 protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>BT019640-1|AAV38446.1| 497|Homo sapiens thioredoxin reductase 1
protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>BC018122-1|AAH18122.2| 499|Homo sapiens thioredoxin reductase 1
protein.
Length = 499
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>AY057105-1|AAL15432.1| 647|Homo sapiens thioredoxin reductase 1
protein.
Length = 647
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 549 IEVYHSYFWPLEWTIPSRD 567
>AK128515-1|BAC87474.1| 581|Homo sapiens protein ( Homo sapiens
cDNA FLJ46672 fis, clone TRACH3009008, highly similar
to Thioredoxin reductase (EC 1.6.4.5). ).
Length = 581
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 498 IEVYHSYFWPLEWTIPSRD 516
>AJ001050-1|CAA04503.1| 497|Homo sapiens thioredoxin reductase
protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>AF208018-1|AAF15900.1| 497|Homo sapiens thioredoxin reductase
protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>AF077367-1|AAC69621.1| 497|Homo sapiens thioredoxin reductase
GRIM-12 protein.
Length = 497
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 146 VDIYHSSFWPTQWDWQSPD 90
+++YHS FWP +W S D
Sbjct: 399 IEVYHSYFWPLEWTIPSRD 417
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
+P+ + KKK+GKY+L D R +N
Sbjct: 63 TPVFVIKKKSGKYQLLHDLRAVN 85
>DQ821442-1|ABG91576.1| 573|Homo sapiens reverse transcriptase
protein.
Length = 573
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 71 SPVFVIQKKSGKWRMLTDLRAVN 93
>DQ058014-2|AAY87453.1| 135|Homo sapiens pol precursor protein.
Length = 135
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 60 SPVFVIQKKSGKWRMLTDLRAVN 82
>AF298588-1|AAK11554.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 71 SPVFVIQKKSGKWRMLTDLRAVN 93
>AF298587-1|AAK11553.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 71 SPVFVIQKKSGKWRMLTDLRAVN 93
>AF164615-1|AAD51799.1| 1117|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1117
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 994 SPVFVIQKKSGKWRMLTDLRAVN 1016
>AF164614-1|AAD51797.1| 1879|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1879
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 994 SPVFVIQKKSGKWRMLTDLRAVN 1016
>AF164611-1|AAD51793.1| 2294|Homo sapiens Gag-Pro-Pol-Env protein
protein.
Length = 2294
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 994 SPVFVIQKKSGKWRMLTDLRAVN 1016
>AF164609-1|AAD51791.1| 1177|Homo sapiens Gag-Pro-Pol protein protein.
Length = 1177
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 994 SPVFVIQKKSGKWRMLTDLRAVN 1016
>AF080234-1|AAC63294.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 54 SPVFVIQKKSGKWRMLTDLRAVN 76
>AF080233-1|AAC63293.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 54 SPVFVIQKKSGKWRMLTDLRAVN 76
>AF080232-1|AAC63292.1| 572|Homo sapiens polymerase protein.
Length = 572
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 54 SPVFVIQKKSGKWRMLTDLRAVN 76
>AF080231-1|AAC63291.1| 596|Homo sapiens polymerase protein.
Length = 596
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 70 SPVFVIQKKSGKWRMLTDLRAVN 92
>AF080229-1|AAC63290.1| 597|Homo sapiens polymerase protein.
Length = 597
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 70 SPVFVIQKKSGKWRMLTDLRAVN 92
>AF074086-7|AAD21097.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 71 SPVFVIQKKSGKWRMLTDLRAVN 93
>AF074086-3|AAF88167.1| 956|Homo sapiens polymerase protein.
Length = 956
Score = 28.3 bits (60), Expect = 4.7
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +2
Query: 104 SPIVLAKKKNGKYRLCVDYRKLN 172
SP+ + +KK+GK+R+ D R +N
Sbjct: 71 SPVFVIQKKSGKWRMLTDLRAVN 93
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,525,552
Number of Sequences: 237096
Number of extensions: 556069
Number of successful extensions: 1134
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1080
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 76,859,062
effective HSP length: 39
effective length of database: 67,612,318
effective search space used: 1352246360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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