Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E06
(180 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein. 44 2e-05
X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein pr... 44 4e-05
AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p pro... 41 2e-04
Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia poly... 40 5e-04
AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein ... 29 0.86
AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse tran... 28 1.5
X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein ( Dros... 27 3.5
X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein ( Dros... 27 3.5
AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependen... 27 3.5
AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein. 27 3.5
AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p pro... 27 3.5
AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse tran... 26 6.1
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 26 6.1
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 26 6.1
AY118634-1|AAM50003.1| 601|Drosophila melanogaster RH60839p pro... 26 8.0
AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein ... 26 8.0
AE014298-1040|AAF46260.2| 601|Drosophila melanogaster CG9657-PA... 26 8.0
>X95908-1|CAA65152.1| 1494|Drosophila melanogaster orf protein.
Length = 1494
Score = 44.4 bits (100), Expect = 2e-05
Identities = 18/26 (69%), Positives = 22/26 (84%)
Frame = +2
Query: 95 DFASPIVLAKKKNGKYRLCVDYRKLN 172
++ASPIVL KKK G R+CVD+RKLN
Sbjct: 751 EYASPIVLVKKKTGDLRMCVDFRKLN 776
>X14037-1|CAA32198.1| 1053|Drosophila melanogaster polyprotein
protein.
Length = 1053
Score = 43.6 bits (98), Expect = 4e-05
Identities = 18/26 (69%), Positives = 23/26 (88%)
Frame = +2
Query: 98 FASPIVLAKKKNGKYRLCVDYRKLNT 175
FASP++L KKKNG RLCVD+R+LN+
Sbjct: 493 FASPMLLVKKKNGTDRLCVDFRELNS 518
>AY050234-1|AAK84933.1| 1026|Drosophila melanogaster SD02026p
protein.
Length = 1026
Score = 41.1 bits (92), Expect = 2e-04
Identities = 18/25 (72%), Positives = 21/25 (84%)
Frame = +2
Query: 101 ASPIVLAKKKNGKYRLCVDYRKLNT 175
AS IV+ KKK+G R+CVDYRKLNT
Sbjct: 219 ASRIVVVKKKDGTLRVCVDYRKLNT 243
>Z27119-1|CAA81643.1| 1333|Drosophila melanogaster blastopia
polyprotein protein.
Length = 1333
Score = 39.9 bits (89), Expect = 5e-04
Identities = 17/25 (68%), Positives = 21/25 (84%)
Frame = +2
Query: 101 ASPIVLAKKKNGKYRLCVDYRKLNT 175
AS IV+ +KK+G R+CVDYRKLNT
Sbjct: 525 ASRIVVVRKKDGTLRVCVDYRKLNT 549
>AF541948-2|AAN34651.1| 1006|Drosophila melanogaster pol protein
protein.
Length = 1006
Score = 29.1 bits (62), Expect = 0.86
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 5/33 (15%)
Frame = +2
Query: 89 NLDFASPIVLAKKK-----NGKYRLCVDYRKLN 172
N + SPIV+ KK KYR+ +DYR LN
Sbjct: 187 NSPYCSPIVVVPKKPDISGQKKYRIAIDYRYLN 219
>AJ000387-3|CAA04050.1| 1217|Drosophila melanogaster reverse
transcriptase protein.
Length = 1217
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 5/32 (15%)
Frame = +2
Query: 98 FASPIVLAKKK-----NGKYRLCVDYRKLNTK 178
+++P+ + KK N K+RL +DYRKLN K
Sbjct: 352 WSAPVWVVPKKLDGTGNRKWRLVIDYRKLNDK 383
>X04132-4|CAA27750.1| 1237|Drosophila melanogaster protein (
Drosophila retrotransposon412 genome. ).
Length = 1237
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Frame = +2
Query: 98 FASPIVLAKKKNG------KYRLCVDYRKLNTK 178
+ SP++L KK+ K+RL +DYR++N K
Sbjct: 350 YNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKK 382
>X01472-2|CAA25702.1| 1058|Drosophila melanogaster protein (
Drosophila melanogastercopia-like element 17.6. ).
Length = 1058
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 5/33 (15%)
Frame = +2
Query: 89 NLDFASPI-VLAKKKNG----KYRLCVDYRKLN 172
N + SPI V+ KK++ K+R+ +DYRKLN
Sbjct: 240 NSPYNSPIWVVPKKQDASGKQKFRIVIDYRKLN 272
>AY928609-2|AAX28841.1| 1000|Drosophila melanogaster RNA-dependent
DNA polymerase protein.
Length = 1000
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 6/33 (18%)
Frame = +2
Query: 98 FASPIVLAKKKNG------KYRLCVDYRKLNTK 178
+ SP++L KK+ K+RL +DYR++N K
Sbjct: 113 YNSPLLLVPKKSSPNSDKKKWRLVIDYRQINKK 145
>AY180918-2|AAN87271.1| 1003|Drosophila melanogaster ORF2 protein.
Length = 1003
Score = 27.1 bits (57), Expect = 3.5
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 5/34 (14%)
Frame = +2
Query: 89 NLDFASPIVLAKKK---NGK--YRLCVDYRKLNT 175
N + SPI + KK NG+ YR+ VD+++LNT
Sbjct: 156 NSPYNSPIWIVPKKPKPNGEKQYRMVVDFKRLNT 189
>AY113457-1|AAM29462.1| 825|Drosophila melanogaster RE36839p
protein.
Length = 825
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 6/34 (17%)
Frame = +2
Query: 95 DFASPIVLAKKKN------GKYRLCVDYRKLNTK 178
++ SP++L KK+ K+RL +DYR++N K
Sbjct: 243 EYNSPLLLVPKKSLPDSKEKKWRLVIDYRQINKK 276
>AY928610-2|AAX28844.1| 1088|Drosophila melanogaster reverse
transcriptase protein.
Length = 1088
Score = 26.2 bits (55), Expect = 6.1
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = +2
Query: 137 KYRLCVDYRKLNTK 178
K+RL +DYRKLN K
Sbjct: 256 KWRLVIDYRKLNEK 269
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = +2
Query: 98 FASPIVLAKKK-----NGKYRLCVDYRKLN 172
+ SP+ + KK KYR+ +DYRKLN
Sbjct: 231 YNSPVWIVPKKLDSSGKKKYRVVIDYRKLN 260
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 5/30 (16%)
Frame = +2
Query: 98 FASPIVLAKKK-----NGKYRLCVDYRKLN 172
+ SP+ + KK KYR+ +DYRKLN
Sbjct: 74 YNSPVWIVPKKLDSSGKKKYRVVIDYRKLN 103
>AY118634-1|AAM50003.1| 601|Drosophila melanogaster RH60839p
protein.
Length = 601
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 29 WIPRVLQ*IPALRGNY*TQVNLDFASPIV 115
W+P V+ +PA+ N T VN+ +PIV
Sbjct: 158 WLPIVIY-VPAIAFNQATGVNIHIVTPIV 185
>AF222049-2|AAF36671.1| 1037|Drosophila melanogaster pol protein
protein.
Length = 1037
Score = 25.8 bits (54), Expect = 8.0
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Frame = +2
Query: 98 FASPIVLAKKK-----NGKYRLCVDYRKLN 172
+ SP+ + +KK K+RL VDYRKLN
Sbjct: 168 YNSPLWVVQKKMDQSNKQKWRLVVDYRKLN 197
>AE014298-1040|AAF46260.2| 601|Drosophila melanogaster CG9657-PA
protein.
Length = 601
Score = 25.8 bits (54), Expect = 8.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 29 WIPRVLQ*IPALRGNY*TQVNLDFASPIV 115
W+P V+ +PA+ N T VN+ +PIV
Sbjct: 158 WLPIVIY-VPAIAFNQATGVNIHIVTPIV 185
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,287,715
Number of Sequences: 53049
Number of extensions: 165517
Number of successful extensions: 336
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 336
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 24,988,368
effective HSP length: 40
effective length of database: 22,866,408
effective search space used: 434461752
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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