Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E06
         (180 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    42   6e-05
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    42   6e-05
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    42   6e-05
Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical pr...    25   5.4  
AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical ...    25   9.4  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
            protein precursor protein.
          Length = 2272

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +2

Query: 98   FASPIVLAKKKNGKYRLCVDYRKLN 172
            ++SP+VL KKK+G  R+C+DYRK+N
Sbjct: 1064 WSSPVVLVKKKDGSIRMCIDYRKVN 1088


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
            protein, isoforma protein.
          Length = 2175

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +2

Query: 98   FASPIVLAKKKNGKYRLCVDYRKLN 172
            ++SP+VL KKK+G  R+C+DYRK+N
Sbjct: 967  WSSPVVLVKKKDGSIRMCIDYRKVN 991


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
            protein, isoformb protein.
          Length = 2186

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 15/25 (60%), Positives = 22/25 (88%)
 Frame = +2

Query: 98   FASPIVLAKKKNGKYRLCVDYRKLN 172
            ++SP+VL KKK+G  R+C+DYRK+N
Sbjct: 978  WSSPVVLVKKKDGSIRMCIDYRKVN 1002


>Z81124-1|CAB03369.1|  312|Caenorhabditis elegans Hypothetical
           protein T21B4.2 protein.
          Length = 312

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 34  PPCAAVNSGTEGQLLNPSQSG 96
           PP A  N GT+G   NP Q+G
Sbjct: 132 PPGADGNPGTDGAAGNPGQAG 152


>AF045645-2|AAC02609.1|  299|Caenorhabditis elegans Hypothetical
           protein K02D7.5 protein.
          Length = 299

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 7/17 (41%), Positives = 13/17 (76%)
 Frame = +3

Query: 66  GAIIKPKSIWTLPVPLC 116
           G ++K + + TLP+P+C
Sbjct: 142 GVVLKNREVSTLPLPMC 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,682,738
Number of Sequences: 27780
Number of extensions: 82489
Number of successful extensions: 157
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 12,740,198
effective HSP length: 40
effective length of database: 11,628,998
effective search space used: 220950962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)