Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E05
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0055 + 22403608-22403865,22403977-22404075,22404172-224042... 52 1e-07
12_02_0785 + 23135764-23135973,23136061-23136713,23136822-231369... 50 8e-07
07_03_1738 - 29141829-29141989,29142112-29142343,29142751-291427... 41 5e-04
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841 30 0.91
09_04_0037 + 13992103-13992624,13993001-13993180,13993423-139936... 29 2.1
08_02_1071 + 24110007-24110492 28 2.8
07_03_1631 - 28258897-28259984,28260518-28260772,28260861-282609... 28 2.8
01_03_0175 + 13450869-13451013,13451293-13451372,13451417-134522... 28 2.8
01_06_1037 + 33990358-33991263 27 4.9
11_06_0062 + 19709801-19710832,19712383-19712568,19712661-197128... 27 8.5
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 27 8.5
03_06_0069 - 31449319-31450368 27 8.5
02_04_0076 - 19486360-19488723 27 8.5
>04_04_0055 +
22403608-22403865,22403977-22404075,22404172-22404213,
22404350-22404479,22405118-22405219,22405960-22406066
Length = 245
Score = 52.4 bits (120), Expect = 1e-07
Identities = 37/114 (32%), Positives = 55/114 (48%), Gaps = 3/114 (2%)
Frame = +1
Query: 13 HGYRQNGALYRGKI-GSFRKAVGKYAQLTFLSAPHKVVNE-DGGGDEDAMSW-WFNAEDN 183
HG+R +G + R ++ G + V L F AP + D G D + WF + N
Sbjct: 28 HGFRTSGEIMRKQVVGKWPADVTARLDLVFADAPFPAEGKSDVEGIFDPPYYEWFQFDKN 87
Query: 184 TFSGKCLGGPAIGFEETLRLIEKVVKDHGPFDGFMGFSQCACLVGLLAAMQQKG 345
+ F+E L IE+++ GPFDG MGFSQ + L G L +Q++G
Sbjct: 88 FTEYR-------NFDECLNYIEELMIKEGPFDGLMGFSQGSILSGALPGLQEQG 134
>12_02_0785 +
23135764-23135973,23136061-23136713,23136822-23136903,
23137031-23137113,23137229-23137361,23137493-23137664,
23137929-23138656
Length = 686
Score = 50.0 bits (114), Expect = 8e-07
Identities = 23/57 (40%), Positives = 30/57 (52%)
Frame = +1
Query: 220 GFEETLRLIEKVVKDHGPFDGFMGFSQCACLVGLLAAMQQKGYLPYSFKFAIFASGF 390
GFEE+ +E + G DG +GFSQ A + L QQK F+F IF SG+
Sbjct: 553 GFEESYAYLEHAISQMGNIDGILGFSQGAAMAALFCRQQQKTCGSLKFRFGIFCSGY 609
Score = 36.7 bits (81), Expect = 0.008
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +1
Query: 13 HGYRQNGALYRGKIGSFRKAVGKYAQLTFLSAPHKV 120
HG+RQN + ++G+ + K + A L F+ APH++
Sbjct: 458 HGFRQNASNFKGRTSALAKKLKHIADLVFIDAPHEL 493
>07_03_1738 -
29141829-29141989,29142112-29142343,29142751-29142792,
29143312-29143410,29143575-29143667,29143742-29143876,
29144251-29144290,29144475-29144844,29146575-29146650
Length = 415
Score = 40.7 bits (91), Expect = 5e-04
Identities = 26/67 (38%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = +1
Query: 241 LIEKVVKDHGPFDGFMGFSQCACLVGLLAAMQQKG-----YLPYSFKFAIFASGFRSGSL 405
L + +VK+ GPFDG +GFSQ A L LL Q +G + P F +I S FR S+
Sbjct: 253 LCDYMVKN-GPFDGLLGFSQGATLSALLIGYQAQGKVLNDHPPIKFMVSIAGSKFRDPSI 311
Query: 406 LHKGFYD 426
+ + D
Sbjct: 312 CNVAYKD 318
>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
Length = 348
Score = 29.9 bits (64), Expect = 0.91
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +1
Query: 7 GFHGYRQNGALYRGKIGSFRKAVGKYAQLTFL---SAPHKVVNEDGGGDEDAMSWWFNAE 177
G HGY G Y G G + A G Y+ F +AP + GG + M+ NA
Sbjct: 225 GGHGYGSGGTGYTGGSGGYNSAPGNYSSDNFNQGGAAPGAYEGANYGGGNNYMN---NAT 281
Query: 178 DNTFSGK 198
+ +GK
Sbjct: 282 SDDSTGK 288
>09_04_0037 +
13992103-13992624,13993001-13993180,13993423-13993691,
13994120-13995773
Length = 874
Score = 28.7 bits (61), Expect = 2.1
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +1
Query: 124 NEDGGGDEDAMSWWFNAEDNTFSGKCLGGPAIGFEETLRLIEKVVKD 264
N DGGGD+D + + E + GGPA G++ RL + KD
Sbjct: 436 NVDGGGDDDDEDFDNSLERKLQTPMHAGGPASGYQP--RLASQFYKD 480
>08_02_1071 + 24110007-24110492
Length = 161
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 13 HGYRQNGALYRGKIGSFRKAVGKYAQLTFLSAPH 114
HGY +G + G +GSF A AQ + H
Sbjct: 96 HGYYTHGFIDHGSLGSFALATSTMAQRAIIRVEH 129
>07_03_1631 -
28258897-28259984,28260518-28260772,28260861-28260975,
28261097-28261149,28261238-28261498,28262122-28262175,
28262294-28262536,28262830-28263073,28263877-28263909
Length = 781
Score = 28.3 bits (60), Expect = 2.8
Identities = 18/42 (42%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Frame = +1
Query: 256 VKDHGPF---DGFMGFSQCACLVGLLAAMQQKGYLPYSFKFA 372
+KD GP DG++ F C LVGL A+Q +G +F FA
Sbjct: 181 LKDPGPGGIPDGWVVFIACIVLVGLF-ALQHRGTHRVAFMFA 221
>01_03_0175 +
13450869-13451013,13451293-13451372,13451417-13452240,
13452287-13452638
Length = 466
Score = 28.3 bits (60), Expect = 2.8
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +1
Query: 13 HGYRQNGALYRGKIGSFRKAVGKYAQLTFLSAPH 114
HGY +G + G +GSF A AQ + H
Sbjct: 412 HGYSTHGFIDHGSLGSFALATSTMAQSAIIRIEH 445
>01_06_1037 + 33990358-33991263
Length = 301
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 268 GPFDGFMGFSQCACLVGLLAAMQQKGYLPY 357
G F GFM ACLVG AA+ + PY
Sbjct: 192 GVFRGFMRSRTRACLVGRQAALDPRVRCPY 221
>11_06_0062 +
19709801-19710832,19712383-19712568,19712661-19712867,
19712940-19713078,19713172-19713380,19713520-19714134
Length = 795
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 28 NGALYRGKIGSFRKAVGKYAQLTFLSAPHKVVNEDGGG 141
+G YR + SF A G A + ++ +V++DGGG
Sbjct: 67 HGTWYRAVVVSFVPARGPRAPARYAASYADLVSDDGGG 104
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 26.6 bits (56), Expect = 8.5
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = -2
Query: 404 RLPDRKPDANIANLNEYGKYPFCC-IAANRPTRQAHCENPMNPSNGP*SLTTFSISLKVS 228
+ P + + + + YPF AA P Q + P +G L TF ++
Sbjct: 129 KFPSSSANPSPPDAYPFTNYPFFPNFAAPPPPTQQQQQQP----SGDGGLPTFPANISTL 184
Query: 227 SKPIAGPPRHFPL 189
P PPR FP+
Sbjct: 185 VHPTQRPPRRFPV 197
>03_06_0069 - 31449319-31450368
Length = 349
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = -2
Query: 275 NGP*SLTTFSISLKVSSKPIAGPPRHFPLNVLSSALNHHDM 153
NG + T S+ + + +P+ PP H + L HHD+
Sbjct: 199 NGAGAGTAASLWPQSAPRPVTPPPPHMDSQLGMGTLGHHDV 239
>02_04_0076 - 19486360-19488723
Length = 787
Score = 26.6 bits (56), Expect = 8.5
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 285 HGIFTMCLPCRSVGCNAAERIFT 353
+G+ TM CRS+GC AE++F+
Sbjct: 144 NGLVTMYASCRSLGC--AEKVFS 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,219,978
Number of Sequences: 37544
Number of extensions: 249333
Number of successful extensions: 656
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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