Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E03
         (215 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    24   3.1  
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ...    24   3.1  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    23   4.1  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    23   5.5  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    23   7.2  
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce...    22   9.6  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    22   9.6  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    22   9.6  

>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -2

Query: 163 RAGVSSRLSDSAQSEEPPDLRTTRRSVM 80
           +A  S+  + +AQSE+  ++RT R + +
Sbjct: 167 KAAASAEATKAAQSEKNKEIRTVREAAL 194


>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
           Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 136 DSAQSEEPPDLRTTRRSVMRMR 71
           D  Q   P DL+  R+S+ R+R
Sbjct: 48  DPFQKYRPKDLKVQRKSIFRLR 69


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = +3

Query: 96  VVRKSGGSSDWAESERREETPAL 164
           V    G  SD  ESE R+E P L
Sbjct: 242 VASSDGDFSDEPESEERDEVPEL 264


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +3

Query: 78  RITDLRVVRKSGGSSDWAESERREETPALRDHDL 179
           +ITD +++ +      W ES+ ++E     +H L
Sbjct: 189 KITDAKLLARLERVRAWKESKAKQEASKKEEHKL 222


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 196 PGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRSV 83
           PG+V+ +  S  + V+S L+   +SEE P +    +S+
Sbjct: 57  PGSVSMQVLSLFSAVNSALATLEKSEEFPSVVKDEQSI 94


>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 427

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 13/49 (26%), Positives = 23/49 (46%)
 Frame = +3

Query: 48  DMCKAVDKRMRITDLRVVRKSGGSSDWAESERREETPALRDHDLVATAP 194
           D+ + VD+R+  +++    KSGG      S +R+         L+A  P
Sbjct: 349 DLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRNAVWFGGSLLAQTP 397


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -1

Query: 107 LAHDAQVRDAHALVHRLAHVV 45
           L H   + DA+ ++H L  V+
Sbjct: 698 LGHSNNINDAYVVIHTLLKVI 718


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = -2

Query: 193 GAVATRS-WSRRAGVSSRLSDSAQSEEPPDLRTT 95
           G  +TR  W +R+ VSS L  S+  E    +  T
Sbjct: 13  GKSSTRQHWRKRSAVSSSLEFSSYEESNSPIENT 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 580,337
Number of Sequences: 5004
Number of extensions: 7051
Number of successful extensions: 19
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 2,362,478
effective HSP length: 51
effective length of database: 2,107,274
effective search space used: 42145480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)