Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E03
(215 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0128 + 22961285-22961386,22962176-22962748 40 4e-04
05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241 30 0.29
11_01_0660 + 5382460-5382764,5383854-5384348,5384454-5384541,538... 29 0.39
07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206 28 0.89
05_03_0475 + 14486969-14487140,14487215-14487338,14487424-144875... 28 1.2
01_07_0098 - 41071997-41072248,41072387-41072519,41072694-410728... 27 1.6
07_03_1607 + 28119886-28120239,28121097-28121153,28121377-281214... 27 2.1
06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776 27 2.1
04_04_0103 + 22808670-22810007 27 2.1
04_04_1023 + 30201374-30201487,30201601-30202285,30202402-302025... 27 2.7
01_01_0208 + 1780275-1781123 26 3.6
11_01_0018 + 133791-134081 26 4.8
01_06_1365 - 36690267-36692222 26 4.8
10_08_0869 - 21174868-21175242 25 6.3
07_03_0121 - 13673432-13673446,13673564-13673791 25 6.3
04_04_1537 - 34235360-34235486,34236107-34236234,34236344-342364... 25 6.3
04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153 25 6.3
03_02_0912 - 12342026-12342262 25 6.3
02_05_0055 + 25453699-25453830,25454157-25454269,25454686-254549... 25 6.3
12_01_0724 - 6377023-6379392 25 8.3
10_02_0069 + 4892849-4892939,4893319-4893414,4894076-4894258,489... 25 8.3
09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528 25 8.3
06_01_0228 - 1736373-1736721,1739915-1740120,1740513-1740844,174... 25 8.3
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 25 8.3
04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220 25 8.3
01_04_0138 + 16554175-16554822 25 8.3
>04_04_0128 + 22961285-22961386,22962176-22962748
Length = 224
Score = 39.5 bits (88), Expect = 4e-04
Identities = 18/34 (52%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Frame = +3
Query: 39 TLYDMCKAVDKRMRITDLRVVRKSGG-SSDWAES 137
T+YDMCKA K + ITD+ + KSGG S W+ S
Sbjct: 191 TVYDMCKAASKNICITDICLQHKSGGKSGSWSRS 224
>05_04_0194 + 18949268-18951514,18952063-18952215,18952304-18954241
Length = 1445
Score = 29.9 bits (64), Expect = 0.29
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = -2
Query: 196 PGAVATRSWSRRAGVSSR--LSDSAQSEEPPDLRTTRR 89
PGAVATR+ SRR ++ + ++ A +EE P R R+
Sbjct: 68 PGAVATRTRSRRMAMAQQAPVTPPAAAEEAPSRRRKRK 105
>11_01_0660 +
5382460-5382764,5383854-5384348,5384454-5384541,
5384629-5384691,5384965-5385125,5385214-5385289,
5385395-5385454,5385555-5385662,5385746-5385982,
5386192-5386307,5386756-5386813
Length = 588
Score = 29.5 bits (63), Expect = 0.39
Identities = 17/37 (45%), Positives = 20/37 (54%)
Frame = -2
Query: 202 SRPGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTR 92
S + A S S + SS L SA S+EPPDL T R
Sbjct: 66 SAASSSAAGSASASSAGSSSLGSSAASDEPPDLGTYR 102
>07_03_0508 - 18892193-18893119,18893183-18894528,18894594-18895206
Length = 961
Score = 28.3 bits (60), Expect = 0.89
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRR 89
G+V++R +RRA ++R S + S PP RR
Sbjct: 25 GSVSSRRRARRAAAATRRSSAIPSSTPPTQEDVRR 59
>05_03_0475 +
14486969-14487140,14487215-14487338,14487424-14487559,
14487663-14488997
Length = 588
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +3
Query: 102 RKSGGSSDWAESERREETPALRDHDLVATAPGR 200
R+SGG S A R TPA D+ AT GR
Sbjct: 463 RRSGGLSSVASRSRLGITPAASSGDISATPTGR 495
>01_07_0098 -
41071997-41072248,41072387-41072519,41072694-41072886,
41072975-41073049,41073140-41073266,41073613-41073833,
41073957-41074110
Length = 384
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/29 (51%), Positives = 16/29 (55%)
Frame = -2
Query: 190 AVATRSWSRRAGVSSRLSDSAQSEEPPDL 104
AVA W R A S R SD+ SE PP L
Sbjct: 23 AVAAAWWWRVARRSRRNSDTGSSETPPTL 51
>07_03_1607 +
28119886-28120239,28121097-28121153,28121377-28121464,
28121557-28121686,28121783-28121962,28122291-28122759
Length = 425
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRSVMRMRLSTAL 56
GA++ R + R G R++ A +EEPPD + VMR T L
Sbjct: 15 GAISRRGFRSRPGRVRRVA--AAAEEPPDESSAAALVMRESCWTQL 58
>06_02_0121 + 12080417-12081632,12082428-12082780,12082844-12083776
Length = 833
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRSV 83
G+V++R +RRA +R S + S PP RR +
Sbjct: 138 GSVSSRRRARRAAAVTRRSSAFPSSTPPTQEDVRRGL 174
>04_04_0103 + 22808670-22810007
Length = 445
Score = 27.1 bits (57), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = -2
Query: 145 RLSDSAQSEEPPDLRTTRRSVMRMRLSTALHM 50
R + A EEPP+ R R++++R + HM
Sbjct: 74 RREEEAAEEEPPEARYRRKAMLRAQDGVLRHM 105
>04_04_1023 +
30201374-30201487,30201601-30202285,30202402-30202506,
30202561-30203939
Length = 760
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = -2
Query: 214 SARRSRPGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRR 89
++RR+R V + RRA +S++ + E P TTRR
Sbjct: 153 ASRRARAEPVVAPTTRRRAAPTSKIETGDVAVEAPPAPTTRR 194
>01_01_0208 + 1780275-1781123
Length = 282
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Frame = -2
Query: 196 PGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTR---RSVMRMRLSTAL 56
P A A+R W R+ ++ ++ + PP+ R R ++ R R S L
Sbjct: 108 PAAAASRPWKLRSRRRPAVAPASSASPPPERRAARARAEALDRARFSVTL 157
>11_01_0018 + 133791-134081
Length = 96
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/31 (48%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 214 SARRSRP--GAVATRSWSRRAGVSSRLSDSA 128
+ARR R G TR WSRR SR + SA
Sbjct: 33 AARRGRGEGGKRKTRRWSRRVAEESRTTPSA 63
>01_06_1365 - 36690267-36692222
Length = 651
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLR 101
G + R+ RR+G S ++D + SE PDLR
Sbjct: 501 GFIHRRASGRRSGGPSDIADRSFSEAWPDLR 531
>10_08_0869 - 21174868-21175242
Length = 124
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 118 PPTGRSPRDARRLRPC 165
P TG PRDA +LR C
Sbjct: 35 PSTGSCPRDALKLRVC 50
>07_03_0121 - 13673432-13673446,13673564-13673791
Length = 80
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 146 RGDSGPAGPRPGRHCARTRPSC 211
RG P G R CA RPSC
Sbjct: 16 RGSGAPPGCERLRSCALRRPSC 37
>04_04_1537 -
34235360-34235486,34236107-34236234,34236344-34236483,
34236967-34237023,34237358-34237475,34237585-34237734,
34237857-34237941,34238040-34238104,34238351-34238500,
34238835-34238910,34239071-34239150
Length = 391
Score = 25.4 bits (53), Expect = 6.3
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 132 ESERREETPALRDHD 176
+ + ++ETPA+RDHD
Sbjct: 365 KKKEQDETPAIRDHD 379
>04_04_0226 + 23754513-23756914,23756972-23757050,23759296-23760153
Length = 1112
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +3
Query: 60 AVDKRMRITDLRVVRKSGGSSDWAESERRE-ETPALRDHDLVATAPGRDLRA 212
++ K M+ L+V GG S RR + P D + V G+D+ A
Sbjct: 823 SLKKNMKAMSLKVKMGGGGGSHGRTRRRRRGKRPEEEDEEEVVEMEGKDIAA 874
>03_02_0912 - 12342026-12342262
Length = 78
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = -2
Query: 196 PGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRSVMRMRLST 62
PG R R S + SA+S P R +R+RLST
Sbjct: 17 PGRAFARDSLERCRTSKKPEQSAESYRCPAHRLNLMQQLRLRLST 61
>02_05_0055 +
25453699-25453830,25454157-25454269,25454686-25454942,
25455480-25456297
Length = 439
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 202 SRPGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTR 92
++ GA ++ RR+G+S + S PD+ +TR
Sbjct: 137 TKNGASEANNYPRRSGLSFAVGTGVASANKPDVPSTR 173
>12_01_0724 - 6377023-6379392
Length = 789
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTR 92
G+V++R +RRA +R S + S PP R
Sbjct: 138 GSVSSRRRARRAAAVTRRSSAIPSSTPPTQEDVR 171
>10_02_0069 +
4892849-4892939,4893319-4893414,4894076-4894258,
4894917-4895941
Length = 464
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +3
Query: 114 GSSDWAESERREETPALRD 170
G +D E E R+E PALRD
Sbjct: 60 GEADIDECELRDEQPALRD 78
>09_04_0082 + 14408962-14409436,14413356-14413780,14414067-14414528
Length = 453
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 108 SGGSSDWAESERREETPALRDHDLV 182
SG SSD RREE R H++V
Sbjct: 159 SGSSSDGERRRRREELTWARRHEVV 183
>06_01_0228 -
1736373-1736721,1739915-1740120,1740513-1740844,
1740935-1741499
Length = 483
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/22 (50%), Positives = 11/22 (50%)
Frame = +2
Query: 146 RGDSGPAGPRPGRHCARTRPSC 211
RG G A PRP RH A C
Sbjct: 140 RGKIGRAAPRPPRHAAPCWSDC 161
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +3
Query: 108 SGGSSDWAESERREETPALRDHDLVATAPGR 200
+GG + A + ++E P +R ATAPGR
Sbjct: 157 NGGEAVGAVTAQQEAAPGVRGAAAWATAPGR 187
>04_04_0645 + 26913947-26915783,26915833-26916308,26916372-26917220
Length = 1053
Score = 25.0 bits (52), Expect = 8.3
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -2
Query: 193 GAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTR 92
G+V++R +RRA +R S + S PP R
Sbjct: 138 GSVSSRRRARRAAAVTRRSSAIPSSTPPTQEDVR 171
>01_04_0138 + 16554175-16554822
Length = 215
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 114 GSSDWAESERREETPALRDHDLVATAPG 197
GSS +RREET A+R+ ++ G
Sbjct: 62 GSSGAQRGKRREETEAVREREVAELTEG 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,993,203
Number of Sequences: 37544
Number of extensions: 77175
Number of successful extensions: 425
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 14,793,348
effective HSP length: 51
effective length of database: 12,878,604
effective search space used: 257572080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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