Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0003_E03
(215 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical pr... 40 3e-04
Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical pr... 27 1.8
AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein. 27 1.8
AF003141-9|AAM48550.1| 89|Caenorhabditis elegans Hypothetical ... 27 2.4
Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical pr... 25 5.5
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical pr... 25 7.3
Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical p... 25 7.3
Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical p... 25 7.3
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein... 25 7.3
AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical ... 25 7.3
AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane... 25 7.3
AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP ubiquit... 25 7.3
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 25 9.7
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 25 9.7
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 25 9.7
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 25 9.7
U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protei... 25 9.7
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 25 9.7
AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical ... 25 9.7
AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical ... 25 9.7
>Z46267-2|CAC42301.1| 600|Caenorhabditis elegans Hypothetical
protein F49E2.1b protein.
Length = 600
Score = 39.5 bits (88), Expect = 3e-04
Identities = 14/30 (46%), Positives = 24/30 (80%)
Frame = +3
Query: 39 TLYDMCKAVDKRMRITDLRVVRKSGGSSDW 128
T+YDMCKA+ ++M +T++ +V KSGG + +
Sbjct: 563 TVYDMCKAISQKMMLTNIYLVHKSGGKTTY 592
>Z81499-2|CAB04088.1| 598|Caenorhabditis elegans Hypothetical
protein F11C3.2 protein.
Length = 598
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 131 GVRETRGDSGPAGPRPGR 184
GVR + GD GP GP PGR
Sbjct: 117 GVRGSPGDQGPVGP-PGR 133
>AY494976-1|AAR87493.1| 598|Caenorhabditis elegans UNC-122 protein.
Length = 598
Score = 27.1 bits (57), Expect = 1.8
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 131 GVRETRGDSGPAGPRPGR 184
GVR + GD GP GP PGR
Sbjct: 117 GVRGSPGDQGPVGP-PGR 133
>AF003141-9|AAM48550.1| 89|Caenorhabditis elegans Hypothetical
protein W02D3.12 protein.
Length = 89
Score = 26.6 bits (56), Expect = 2.4
Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +2
Query: 128 GGVRETRGD-SGPAGPRPGRH 187
GGV ++ G+ GPAGP P R+
Sbjct: 57 GGVNKSTGEVGGPAGPEPTRY 77
>Z70207-1|CAA94128.1| 291|Caenorhabditis elegans Hypothetical
protein F15A2.1 protein.
Length = 291
Score = 25.4 bits (53), Expect = 5.5
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +2
Query: 149 GDSGPAGPRPGRHCA 193
G +GPAGPR RH A
Sbjct: 200 GPAGPAGPRGTRHSA 214
>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
C10C6.1 protein.
Length = 1565
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 214 SARRSRPGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRS 86
S+ +RP V T + S S + D S + P+L RRS
Sbjct: 1474 SSYTTRPDGVVTPATSSSPNNSGFVQDLISSRQSPNLSARRRS 1516
>Z30974-5|CAH19087.1| 3183|Caenorhabditis elegans Hypothetical protein
K08E5.3b protein.
Length = 3183
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 152 DSGPAGPRPGRHCARTRPSC 211
D P+ RPGR C P C
Sbjct: 1210 DKSPSSSRPGRLCIPVIPEC 1229
>Z30974-4|CAA83226.2| 3767|Caenorhabditis elegans Hypothetical protein
K08E5.3a protein.
Length = 3767
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 152 DSGPAGPRPGRHCARTRPSC 211
D P+ RPGR C P C
Sbjct: 1794 DKSPSSSRPGRLCIPVIPEC 1813
>Z30423-15|CAH19103.1| 3183|Caenorhabditis elegans Hypothetical
protein K08E5.3b protein.
Length = 3183
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 152 DSGPAGPRPGRHCARTRPSC 211
D P+ RPGR C P C
Sbjct: 1210 DKSPSSSRPGRLCIPVIPEC 1229
>Z30423-14|CAC42345.1| 3767|Caenorhabditis elegans Hypothetical
protein K08E5.3a protein.
Length = 3767
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 152 DSGPAGPRPGRHCARTRPSC 211
D P+ RPGR C P C
Sbjct: 1794 DKSPSSSRPGRLCIPVIPEC 1813
>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
protein.
Length = 1565
Score = 25.0 bits (52), Expect = 7.3
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -2
Query: 214 SARRSRPGAVATRSWSRRAGVSSRLSDSAQSEEPPDLRTTRRS 86
S+ +RP V T + S S + D S + P+L RRS
Sbjct: 1474 SSYTTRPDGVVTPATSSSPNNSGFVQDLISSRQSPNLSARRRS 1516
>AL023839-2|CAA19508.1| 1066|Caenorhabditis elegans Hypothetical
protein Y39A1C.2 protein.
Length = 1066
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 190 AVATRSWSRRAGVSSRLSDSA--QSEEPPDLRTTRRSVMRMRLSTALHM 50
A ++ W + G + S S+ +SE PP L V L+T +HM
Sbjct: 417 AAFSKLWRKLGGSTDSASSSSKSESEPPPTLIAIVCQVYMTALNTMVHM 465
>AF139060-1|AAD29428.1| 3767|Caenorhabditis elegans transmembrane cell
adhesion receptorMUA-3 precursor protein.
Length = 3767
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 10/20 (50%)
Frame = +2
Query: 152 DSGPAGPRPGRHCARTRPSC 211
D P+ RPGR C P C
Sbjct: 1794 DKSPSSSRPGRLCIPVIPEC 1813
>AB006659-1|BAA21847.1| 655|Caenorhabditis elegans E6-AP
ubiquitin-protein ligase protein.
Length = 655
Score = 25.0 bits (52), Expect = 7.3
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = -2
Query: 190 AVATRSWSRRAGVSSRLSDSA--QSEEPPDLRTTRRSVMRMRLSTALHM 50
A ++ W + G + S S+ +SE PP L V L+T +HM
Sbjct: 6 AAFSKLWRKLGGSTDSASSSSKSESEPPPTLIAIVCQVYMTALNTMVHM 54
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 125 LGGVRETRGDSGPAGPR 175
L G++ +G SGPAGPR
Sbjct: 288 LPGMKGEKGLSGPAGPR 304
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 125 LGGVRETRGDSGPAGPR 175
L G++ +G SGPAGPR
Sbjct: 287 LPGMKGEKGLSGPAGPR 303
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 125 LGGVRETRGDSGPAGPR 175
L G++ +G SGPAGPR
Sbjct: 287 LPGMKGEKGLSGPAGPR 303
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 125 LGGVRETRGDSGPAGPR 175
L G++ +G SGPAGPR
Sbjct: 288 LPGMKGEKGLSGPAGPR 304
>U23520-6|AAC46553.1| 287|Caenorhabditis elegans Collagen protein
175 protein.
Length = 287
Score = 24.6 bits (51), Expect = 9.7
Identities = 11/17 (64%), Positives = 12/17 (70%)
Frame = +2
Query: 131 GVRETRGDSGPAGPRPG 181
G R RGD+GP GP PG
Sbjct: 148 GPRGPRGDAGPPGP-PG 163
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV)
collagen protein.
Length = 1795
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +2
Query: 125 LGGVRETRGDSGPAGPR 175
L G++ +G SGPAGPR
Sbjct: 324 LPGMKGEKGLSGPAGPR 340
>AF099916-2|AAC68776.1| 1145|Caenorhabditis elegans Hypothetical
protein F54C4.3 protein.
Length = 1145
Score = 24.6 bits (51), Expect = 9.7
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = -2
Query: 178 RSWSRRAGVSSRLSDSAQSEE---PPDLRTTRRSVMRMR 71
RS SRR + +R E PP R T RSV+R R
Sbjct: 952 RSPSRRIRIPTRKIQELDQESVLPPPPRRETTRSVVRSR 990
>AF016687-5|AAC48093.1| 709|Caenorhabditis elegans Hypothetical
protein T21D12.11 protein.
Length = 709
Score = 24.6 bits (51), Expect = 9.7
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 128 GGVRETRGDSGPAGPRPGRHCARTRPSC 211
GG + G SGP P HC RP C
Sbjct: 171 GGGSGSGGGSGPGADSPRIHCC--RPCC 196
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,495,265
Number of Sequences: 27780
Number of extensions: 46459
Number of successful extensions: 306
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,740,198
effective HSP length: 51
effective length of database: 11,323,418
effective search space used: 226468360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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