Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E02
         (433 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    27   0.93 
SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|...    27   1.2  
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13...    25   3.8  
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac...    25   3.8  
SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces pomb...    25   5.0  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    25   6.6  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    25   6.6  
SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr 2||...    25   6.6  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    24   8.7  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       24   8.7  

>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 27.5 bits (58), Expect = 0.93
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = -1

Query: 325 YLCTIICGFSIHRGSIYSKQHIAHVNSIS 239
           Y+C   CG+ +H   +Y  +H+AHVN I+
Sbjct: 195 YVCD--CGYCLH---VYCCKHLAHVNCIN 218


>SPAC18B11.03c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +2

Query: 59  LCKPYSTMVIYGVYIVSKSGGLIYNYDHNI 148
           LC    T+ ++ VY+++    L++ YDH++
Sbjct: 98  LCYDDETLPLWMVYVLNDKSELVFIYDHSL 127


>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 777

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 311 DGTQVFDFLELHANYPLNLTSA 376
           DGTQVF  LE H +  L L S+
Sbjct: 352 DGTQVFGVLEGHTDIVLTLDSS 373


>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 340

 Score = 25.4 bits (53), Expect = 3.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 92  GVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLH 202
           GVYI++ + G I N D  I  +++ K     LD+ L+
Sbjct: 243 GVYIINTARGAIINEDAFIKAIKSGKVARAGLDVFLN 279


>SPBC725.04 |||oxalyl-CoA decarboxylase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 341 LHANYPLNLTSARAPATTNDTIVL 412
           L  ++PLN++SAR+ A  N  +VL
Sbjct: 243 LPESHPLNVSSARSAALRNADVVL 266


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +2

Query: 302  TTDDGTQVFDFLELHANYPLNLTSARAPATTND 400
            TTD+  +  D L + +N+     S  APAT  +
Sbjct: 3123 TTDENKRNEDILSIQSNFLSTNQSTNAPATNKE 3155


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +2

Query: 137 DHNIPKVETEKTFGYPLDIKLHHE 208
           D  +PK + +  FG  L  + HHE
Sbjct: 808 DRYVPKDQLDSNFGGSLHFEYHHE 831


>SPBC609.01 |||ribonuclease II |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1157

 Score = 24.6 bits (51), Expect = 6.6
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 300 FPFTGDPFTVSNTLPTLIPSL*P 232
           FPF   PF+ S    TL+P L P
Sbjct: 73  FPFQSGPFSKSRRENTLLPRLNP 95


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 102 SLVSPAV*YIIMITTFRKWKLKKHSGIHLTSNYIM 206
           S+V P   ++  +   ++W  K H    LT+NY++
Sbjct: 449 SVVHPDKVHVTAVVDKKEWTDKNHIFYGLTTNYLL 483


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 24.2 bits (50), Expect = 8.7
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 254 VGNVLLTVNGSPVNGKTTDDGTQVFDFLE 340
           +G VLL ++  P N +   D  +++ FLE
Sbjct: 1   MGKVLLELHSVPWNEEGLSDNARLYSFLE 29


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,778,785
Number of Sequences: 5004
Number of extensions: 36695
Number of successful extensions: 96
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 96
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 154067960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)