Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E02
         (433 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0367 - 2636487-2636498,2636655-2636724,2636831-2636937,263...    30   0.92 
09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,989...    29   1.2  
07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024     29   1.2  
10_06_0121 - 10987553-10987648,10990674-10991398,10991452-109918...    27   4.9  
01_01_1067 + 8403584-8404195,8404532-8404693,8404837-8405346,840...    27   4.9  
10_08_1046 + 22542074-22544749,22544837-22545544                       27   8.6  
01_07_0297 - 42583439-42583697,42583763-42583953,42583995-425842...    27   8.6  

>06_01_0367 -
           2636487-2636498,2636655-2636724,2636831-2636937,
           2637208-2637226,2637383-2637470,2638175-2638303,
           2638428-2638506,2639658-2639720,2640437-2640535,
           2641583-2641740,2642926-2643094,2643174-2643239
          Length = 352

 Score = 29.9 bits (64), Expect = 0.92
 Identities = 11/23 (47%), Positives = 18/23 (78%)
 Frame = +2

Query: 74  STMVIYGVYIVSKSGGLIYNYDH 142
           ++  IY ++I++KSGGLIY  D+
Sbjct: 2   ASAAIYSLFIINKSGGLIYYKDY 24


>09_02_0496 - 9892242-9892499,9892956-9893045,9893046-9893094,
            9893330-9893557,9894095-9894261,9894312-9894395,
            9894614-9894820,9894919-9895251,9895371-9895513,
            9895607-9895723,9895824-9895980,9896054-9896157,
            9896272-9896432,9896518-9896707,9896732-9896834,
            9896950-9897231,9897327-9897649,9897750-9897786,
            9898109-9898162,9898292-9898368,9898449-9898502,
            9898738-9898822,9900289-9900426,9900592-9900603
          Length = 1150

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +2

Query: 260  NVLLTVNGSPVNGKTTDDGTQVFDFLELHANYPLNLTSARAPATTNDTIVLASMF 424
            N L+T     V+ K  D+G +V DF+E +  Y L+L    A A  +  I+ A +F
Sbjct: 1085 NGLVTSQFGDVDDKF-DNGVRVSDFVESYFGYNLDLLWVAAMAVVSFAILFAILF 1138


>07_03_0242 + 15700336-15700401,15700481-15700649,15701828-15702024
          Length = 143

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 11/19 (57%), Positives = 16/19 (84%)
 Frame = +2

Query: 86  IYGVYIVSKSGGLIYNYDH 142
           IY ++I++KSGGLIY  D+
Sbjct: 6   IYSLFIINKSGGLIYYKDY 24


>10_06_0121 -
           10987553-10987648,10990674-10991398,10991452-10991848,
           10993613-10993633
          Length = 412

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +2

Query: 137 DHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRD 244
           D N  K   +K+ GY L  KL  E KKI    GQ D
Sbjct: 190 DDNGDKSSKKKSGGYKLMKKLKKEGKKIEAFIGQWD 225


>01_01_1067 +
           8403584-8404195,8404532-8404693,8404837-8405346,
           8405434-8405493,8405721-8406137,8406576-8407100
          Length = 761

 Score = 27.5 bits (58), Expect = 4.9
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +2

Query: 203 HENKKIVVSFGQR-DGINVGNVLLTVNGSPVNGKTTDDGTQV 325
           H     VV FG R DG N   ++  VNG    G T D+ + V
Sbjct: 337 HSRAMGVVPFGSRNDGKNDPTIMAIVNGESGEGLTMDEASFV 378


>10_08_1046 + 22542074-22544749,22544837-22545544
          Length = 1127

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 101 IVSKSGGLIYNYDHNIPKVETEKTFGY 181
           +V ++GG    +DHN    ET+ T+GY
Sbjct: 200 LVKQNGGAPGEFDHNRWLFETKGTYGY 226


>01_07_0297 -
           42583439-42583697,42583763-42583953,42583995-42584201,
           42584291-42584362,42584472-42584507
          Length = 254

 Score = 26.6 bits (56), Expect = 8.6
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 5/80 (6%)
 Frame = +2

Query: 95  VYIVSKSGGLIYNY---DHNIPKVET-EKTFGYPLDIKLHHENKKIVVSFGQRDGINVGN 262
           V    K G L  N+   D N+ +VE   K   +P+D  +  E+K  +V   QR+G   G 
Sbjct: 138 VLCCDKIGTLTLNHLTVDKNLIEVENFNKNMWFPVDAGMFPEHKYEIVRIIQREGHLCG- 196

Query: 263 VLLTVNG-SPVNGKTTDDGT 319
             +T NG + +  K  D GT
Sbjct: 197 --MTGNGMNALALKKADIGT 214


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,493,881
Number of Sequences: 37544
Number of extensions: 198438
Number of successful extensions: 360
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 360
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 814473264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)