Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E02
         (433 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical pr...    85   2e-17
AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical ...    29   1.1  
U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily ass...    29   1.9  
Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical pr...    28   3.3  
Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical p...    28   3.3  
U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical pr...    27   4.4  
AF099920-8|AAK29848.1|  402|Caenorhabditis elegans Hypothetical ...    27   4.4  
AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cycl...    27   5.8  
Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical pr...    27   7.7  
Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical pr...    27   7.7  
AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical ...    27   7.7  

>U53181-6|AAA93486.1|  224|Caenorhabditis elegans Hypothetical
           protein F36D4.2 protein.
          Length = 224

 Score = 85.4 bits (202), Expect = 2e-17
 Identities = 41/119 (34%), Positives = 73/119 (61%), Gaps = 3/119 (2%)
 Frame = +2

Query: 86  IYGVYIVSKSGGLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNV 265
           I  ++I++++G LIY+++      E EKT+ +P+D+ L   ++K VV FG++DGI +   
Sbjct: 5   IQHLFIINRAGSLIYSWEARTETPEVEKTYEWPIDVHLEEVDQKAVVVFGEKDGIKLRYY 64

Query: 266 LLTVNGSPVNGKTTDDGTQ---VFDFLELHANYPLNLTSARAPATTNDTIVLASMFYPL 433
           + +VNG  V+G     G Q   V ++L+   +YP+ +  A    +TN+ I+L+SMF+ L
Sbjct: 65  VKSVNGETVSGTRLQLGAQQVNVLEYLQEEDHYPVTVKFAAPTVSTNEKIILSSMFHSL 123


>AF036695-3|ABD63231.1|  193|Caenorhabditis elegans Hypothetical
           protein F16B3.3 protein.
          Length = 193

 Score = 29.5 bits (63), Expect = 1.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 245 HLFDQMKRLFFYFHDVV*CQVDTRMF-FQFPLSECC 141
           H FDQ+ +LF+Y    V  +V  R+F   F L  CC
Sbjct: 132 HDFDQVTQLFYYSEKFVAKEVHNRLFVLGFSLMFCC 167


>U53147-4|AAA96115.1|  668|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 117 protein.
          Length = 668

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 7/94 (7%)
 Frame = +2

Query: 143 NIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGI-------NVGNVLLTVNGSPVNGK 301
           N+  VE  K     L   + +EN KI+V    + GI         G+ LL +NGS + GK
Sbjct: 232 NVKVVEVVKDEDSYLGATVRNENNKIIVGRVVKGGIVEKMNLFQEGDELLELNGSSLKGK 291

Query: 302 TTDDGTQVFDFLELHANYPLNLTSARAPATTNDT 403
                 QV +  ++  N    +T   AP    DT
Sbjct: 292 ------QVNEICDILRNLSGPITFVVAPKEEQDT 319


>Z49912-9|CAA90141.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49912-8|CAE54898.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49907-13|CAA90091.2| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6a protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>Z49907-12|CAE54883.1| 1067|Caenorhabditis elegans Hypothetical
           protein T24F1.6b protein.
          Length = 1067

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 15/31 (48%), Positives = 19/31 (61%)
 Frame = +2

Query: 68  PYSTMVIYGVYIVSKSGGLIYNYDHNIPKVE 160
           P S+  +YG YIV  +G LIY+    IPK E
Sbjct: 495 PTSSEQMYG-YIVDNNGMLIYHPQLQIPKTE 524


>U23527-3|AAC46573.3|  596|Caenorhabditis elegans Hypothetical
           protein K09E2.2 protein.
          Length = 596

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 6/60 (10%)
 Frame = +2

Query: 248 INVGNVLLTVNGSPVNGKTTDDGTQVFDFLE------LHANYPLNLTSARAPATTNDTIV 409
           +++  V+LTVNG+P N  T   G  V +F E      +H NY    T  +    T   IV
Sbjct: 535 VSMETVVLTVNGAPRNITTKSAGKYVVNFGEAGKKQRIHENYVTPATLFQFLMVTRPLIV 594


>AF099920-8|AAK29848.1|  402|Caenorhabditis elegans Hypothetical
           protein H06H21.9 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 18/75 (24%), Positives = 34/75 (45%), Gaps = 5/75 (6%)
 Frame = +2

Query: 119 GLIYNYDHNIPKVETEKTFGYPLDIKLHHENKKIVVSFGQRDGI-----NVGNVLLTVNG 283
           G++   DH I      +     L + +   ++K+VV++   D +     N+G  ++ V+ 
Sbjct: 194 GILATQDHTIDLAILYQFKYLQLGLNVQQVDRKVVVNYTIPDSVSHCSLNIGEAIIAVDD 253

Query: 284 SPVNGKTTDDGTQVF 328
            P+N  T  D  Q F
Sbjct: 254 KPIN--TLADNRQRF 266


>AC006683-1|AAK71395.4|  954|Caenorhabditis elegans Adenylyl cyclase
           protein 4 protein.
          Length = 954

 Score = 27.1 bits (57), Expect = 5.8
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +2

Query: 155 VETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNVLLTVNGS 286
           VE    F   L +KL   N     +F  R GINVG V+  V GS
Sbjct: 836 VEAIALFARELLVKLESTNIHSFNNFNLRIGINVGPVVAGVIGS 879


>Z93384-3|CAB07634.3| 1341|Caenorhabditis elegans Hypothetical
           protein H08M01.2b protein.
          Length = 1341

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 152 KVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNVLLTVNGSPVNGKTTD 310
           K+ET K F   L++   +E  +I+   G+RD I V ++    + SPVN  +TD
Sbjct: 549 KLETVKNF---LEVDDRYEWMRIMA--GERDQIIVNHLPFIFDVSPVNCPSTD 596


>Z93384-2|CAE54901.1| 1320|Caenorhabditis elegans Hypothetical
           protein H08M01.2a protein.
          Length = 1320

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +2

Query: 152 KVETEKTFGYPLDIKLHHENKKIVVSFGQRDGINVGNVLLTVNGSPVNGKTTD 310
           K+ET K F   L++   +E  +I+   G+RD I V ++    + SPVN  +TD
Sbjct: 549 KLETVKNF---LEVDDRYEWMRIMA--GERDQIIVNHLPFIFDVSPVNCPSTD 596


>AF099921-1|AAC68807.1| 1286|Caenorhabditis elegans Hypothetical
           protein M01E10.2 protein.
          Length = 1286

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 315 PSSVVFPFTGDPFTVSNTLPT 253
           P+S V P T  P TV+ T PT
Sbjct: 543 PTSTVTPMTSPPSTVTETTPT 563


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,652,007
Number of Sequences: 27780
Number of extensions: 198999
Number of successful extensions: 487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 476
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 724655464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)