Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E02
         (433 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   1.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    22   2.6  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   4.5  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   5.9  
AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding pr...    21   7.8  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.6 bits (46), Expect = 1.9
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +2

Query: 164 EKTFGYPLDIKLHHEN-KKIVVSFGQRDGINVGNVLLTVNGSPVNGK 301
           +KT G        + N K +VVS  +   IN+  V+  V    V GK
Sbjct: 211 DKTGGSAKKSLTEYNNLKAMVVSGSKGSNINISQVIACVGQQNVEGK 257


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +2

Query: 200 HHENKKIVVSFGQRDGINVGNVLLTVNG 283
           +H+N ++   FG++ G  +  + LT+ G
Sbjct: 352 NHDNHRVASRFGRQRGDEIVMLTLTLPG 379


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +2

Query: 158 ETEKTFGYPLDIKLHHENKK 217
           E E  FG+PL+  L + +K+
Sbjct: 499 EVEYVFGHPLNKSLKYSDKE 518


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.0 bits (42), Expect = 5.9
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
 Frame = +2

Query: 101 IVSKSGGLIYNYDHN------IPKVETEKTFGYPLDIKLHHENKKIVV 226
           ++ K   L Y++D++      I   E ++T  YPLD+   H    + V
Sbjct: 38  VIHKWKYLDYDFDNDERRQAAIQSGEYDRTKNYPLDVDQWHNKTFLAV 85


>AB083011-1|BAC54132.1|  135|Apis mellifera fatty acid binding
           protein protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 7.8
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +2

Query: 290 VNGKTTDDGTQVFDFLELHANYPLNLTSARAPATTNDTIVLASMFY 427
           + G T    TQV D L++   Y  +        +TN + V A+  Y
Sbjct: 87  IEGNTFKTETQVNDSLKVTRLYEFSDNELLVHISTNKSDVKATRVY 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,014
Number of Sequences: 438
Number of extensions: 2364
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11244597
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)