Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E01
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1952.07 |rad1||checkpoint clamp complex protein Rad1|Schizos...    34   0.012
SPCC1442.14c |||adenosine 5'-monophosphoramidase|Schizosaccharom...    26   2.5  
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr...    26   2.5  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    24   9.9  
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb...    24   9.9  

>SPAC1952.07 |rad1||checkpoint clamp complex protein
           Rad1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 323

 Score = 33.9 bits (74), Expect = 0.012
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
 Frame = +1

Query: 10  KILCSLLKAIQFQETAVFCALPEGLKLTVEEGKCVQASAYVPADNFTEYNVKEDVD---I 180
           K + S L+ I F +         GL+  VEE + +QA A++    F  +N + D D    
Sbjct: 10  KQIQSTLRCIDFSKECTIEITSRGLRFAVEESQSLQAHAFLDKSLFQTFNFQGDSDGDTY 69

Query: 181 MFKISIAAL 207
           MF+  I+ L
Sbjct: 70  MFQTMISPL 78


>SPCC1442.14c |||adenosine
           5'-monophosphoramidase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 133

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 365 ELRDEDCADIAKLVLKAPAFLG 430
           EL DE CADI  LV K    +G
Sbjct: 51  ELSDESCADILPLVKKVTKAIG 72


>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 515

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 10/44 (22%), Positives = 26/44 (59%)
 Frame = +1

Query: 85  KLTVEEGKCVQASAYVPADNFTEYNVKEDVDIMFKISIAALKNA 216
           ++++ + K + +   +  ++  +Y + E+ DI++   I+A KNA
Sbjct: 98  EISISKEKKINSLLKLVRESAQDYTINEENDILYHSEISAKKNA 141


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 7/22 (31%), Positives = 16/22 (72%)
 Frame = -1

Query: 201 RYTDLKHNINILFNIILSEIIC 136
           RY D K+ +N ++N+  ++++C
Sbjct: 129 RYRDPKNRLNAVWNVCKTKMVC 150


>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 967

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -1

Query: 180 NINILFNIILSEIICWYVCRCLDTFPFFHG*FESF 76
           ++N LF +IL E   +Y   C D   FF      F
Sbjct: 197 SLNSLFQVILLECKLFYDLNCQDIPEFFEDHMSEF 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,815,526
Number of Sequences: 5004
Number of extensions: 35109
Number of successful extensions: 95
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)