Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_E01
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0229 - 1757998-1758241,1758318-1758388,1758467-1758586,175...    32   0.26 
04_03_0733 + 19116771-19116957,19117733-19117858,19117946-191180...    28   4.3  
12_01_0982 + 9945920-9946066,9946185-9946254,9946481-9946526,994...    27   5.6  
09_02_0397 - 8549273-8549380,8549718-8549765,8549875-8549964,855...    27   5.6  
12_02_1238 - 27246769-27246948,27247030-27247104,27247848-272479...    27   9.8  
03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670     27   9.8  

>06_01_0229 -
           1757998-1758241,1758318-1758388,1758467-1758586,
           1758685-1758805,1759264-1759418,1759507-1759644,
           1759688-1759801
          Length = 320

 Score = 31.9 bits (69), Expect = 0.26
 Identities = 18/58 (31%), Positives = 27/58 (46%)
 Frame = +1

Query: 49  ETAVFCALPEGLKLTVEEGKCVQASAYVPADNFTEYNVKEDVDIMFKISIAALKNA*N 222
           + AV      G+ L VEE  C+QA  Y+  + F EY    +    F +S+  L +  N
Sbjct: 54  QDAVLELSEHGIVLIVEESGCLQAKVYLKRELFMEYEYAAEGRPRFGLSLGLLVDCLN 111


>04_03_0733 +
           19116771-19116957,19117733-19117858,19117946-19118061,
           19118395-19118483,19118692-19118743,19119361-19119829,
           19120985-19121367,19121450-19122132,19122561-19123152,
           19123255-19123638,19124106-19124114
          Length = 1029

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/43 (39%), Positives = 24/43 (55%)
 Frame = -1

Query: 399 LAISAQSSSRNSNTESAVCV*ISQSVTTLLTDNGCKTNSSGDP 271
           L IS  S S  S+ E  +   +++ V  LL +NG   NS+GDP
Sbjct: 551 LDISPSSRSLKSSEELLL---LAKFVRMLLCENGSHANSNGDP 590


>12_01_0982 +
           9945920-9946066,9946185-9946254,9946481-9946526,
           9947009-9947068,9947484-9947775
          Length = 204

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -2

Query: 395 RYPHNPHHAIPTRNPP 348
           R+PHNP HA P   PP
Sbjct: 23  RHPHNPRHARPLCVPP 38


>09_02_0397 -
           8549273-8549380,8549718-8549765,8549875-8549964,
           8550479-8550562,8551119-8551280,8551729-8551781,
           8552763-8552807,8553840-8553876,8554212-8554320,
           8554391-8554818,8554939-8555085
          Length = 436

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = -1

Query: 462 TSQDRSKSANRPRNAGALRTSLAISAQSSSRNSNTESAVCV*ISQSVTTLLTDNGCK 292
           T+ D ++  +  R    + T+  +S + ++ NSN  S   V ++        D GC+
Sbjct: 114 TNGDEAQGGDASRKENTVSTNPCVSDEKAATNSNVSSGHGVILTSVEADAAEDKGCR 170


>12_02_1238 -
           27246769-27246948,27247030-27247104,27247848-27247959,
           27248213-27248295,27248544-27248791,27249448-27249533,
           27250131-27250210,27250310-27250480,27250998-27251099,
           27251591-27251743,27252459-27252575,27252715-27252804,
           27253057-27253196,27253339-27253396,27253931-27254010,
           27254215-27254349,27254482-27254646,27254982-27255021
          Length = 704

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
 Frame = +1

Query: 70  LPEGLKLTVEEG---KCVQASAYVPADNFTEYNVKEDVDIMFKIS 195
           L E +KL ++ G    C      +P +    Y  +EDV+I+F ++
Sbjct: 256 LTEAIKLLLKAGANPNCPDTHGRMPIELAAVYGTREDVEILFPLT 300


>03_02_0856 - 11815684-11815701,11816019-11816194,11817878-11818670
          Length = 328

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -1

Query: 450 RSKSANRPRNAGALRTSLAISAQSSSRNSNTESA 349
           RS+S  R R   A   + A +A SSS ++NT  A
Sbjct: 95  RSRSRRRQRQMQAAAAAAAAAASSSSPSANTSPA 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,483,277
Number of Sequences: 37544
Number of extensions: 214270
Number of successful extensions: 456
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)