Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D24
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    25   3.7  
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr...    25   3.7  
SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein At...    25   6.4  
SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces ...    24   8.5  
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    24   8.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    24   8.5  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 294 VCHMNGSLIMIVKNNYVSYRASGLGYVPI 380
           +C+++ S IMI+ N+  SY A     +PI
Sbjct: 410 ICNIHLSRIMIIDNSPASYNAHKENAIPI 438


>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 749

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 29  PNGGSSSKYPSTRLATPRTASQPVTTVGETQP 124
           P GGS   +P     +PRT + P+++ G   P
Sbjct: 279 PFGGSPVMHPPVSNLSPRTPAVPMSSDGHLAP 310


>SPAC4F10.07c |atg13|apg13, mug78|autophagy associated protein Atg13
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 58  LNTFGDAAHRQSARDNGW*N 117
           LN FG +  R+S+++N W N
Sbjct: 60  LNVFGTSRPRESSKNNKWFN 79


>SPCC548.06c |ght8||hexose transporter Ght8 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 547

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -1

Query: 128 VSAGFHQPLSRADWRCAASPNVLRGILM 45
           ++ G H+    A WR +   N+L GI+M
Sbjct: 165 INMGTHKLHKTAQWRVSMGINLLWGIIM 192


>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
 Frame = -3

Query: 402 NLKTVYLLWAHNPTHLPYMIRNCSSRS*LEIRSYDR-HETDFAWYR 268
           N KT  LL  HN     YM+R        E+ ++ R H+ D  + R
Sbjct: 276 NNKTT-LLAVHNSEERDYMVRQARHHQLQELENWSRKHDEDLEFSR 320


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 255  YWYVSGTKQNLSHVCHMNGSLIMIVKNNYVSYRAS 359
            Y+++    Q +S VCH N  +  I+++   +  AS
Sbjct: 1894 YFFLVALSQMISRVCHPNNKVYKILEHIIANVVAS 1928


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,801,974
Number of Sequences: 5004
Number of extensions: 35066
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)