Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D24
         (422 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0527 + 4580599-4580818,4580933-4581806,4581891-4581955,458...    35   0.031
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928     29   1.2  
05_03_0489 - 14662378-14664957                                         28   2.7  
02_02_0130 + 7062063-7063370                                           27   4.7  
02_02_0128 - 7043895-7045202                                           27   4.7  
12_02_0364 - 18020249-18020737,18021075-18021502,18021563-180216...    27   6.2  
04_04_1135 + 31140032-31140043,31140552-31140592,31140680-311407...    27   6.2  
02_05_0548 + 29896648-29896701,29896818-29897021,29897451-298977...    27   8.2  

>08_01_0527 +
           4580599-4580818,4580933-4581806,4581891-4581955,
           4582055-4582110,4582955-4583058,4583310-4583382,
           4583474-4583654,4584537-4584622
          Length = 552

 Score = 34.7 bits (76), Expect = 0.031
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
 Frame = +3

Query: 9   DYNKYKDQTGVVHQNTPQHVWRRRAPPVSP*QRLVKPSRN-VGIEKSKGNTRKPVKI 176
           D  K K+   +V QN P H W +R     P +  +KP R+  G+++S G  +   K+
Sbjct: 477 DDEKMKESGFIVPQNIPSHSWLKRGVDPPPNRYGIKPGRHWDGVDRSNGFEKDMFKL 533


>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
          Length = 839

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -3

Query: 411 EYKNLKTVYLLWAHNPTHLPYMIRNCSSRS*LEIRSYDRHETDFAWYR 268
           ++ NLKT+  +W H     P M+RN    + L   S   HE D ++ +
Sbjct: 582 DFGNLKTLQSIWPHIYVMSPTMLRNMGGLTKLRHLSIRFHEWDESYQK 629


>05_03_0489 - 14662378-14664957
          Length = 859

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +3

Query: 231 TKINLRSFYWYVSG-TKQNLSHVCHMNGSLIMIVKNNYV 344
           TK+N RSF+ Y++  T QN   V   +G +      NYV
Sbjct: 307 TKVNQRSFFIYINNQTAQNQMDVIVWSGGIGRTTYTNYV 345


>02_02_0130 + 7062063-7063370
          Length = 435

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 61  NTFGDAAHRQSARDNGW 111
           N+FG ++ R+ AR NGW
Sbjct: 254 NSFGSSSRRRGARGNGW 270


>02_02_0128 - 7043895-7045202
          Length = 435

 Score = 27.5 bits (58), Expect = 4.7
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = +1

Query: 61  NTFGDAAHRQSARDNGW 111
           N+FG ++ R+ AR NGW
Sbjct: 254 NSFGSSSRRRGARGNGW 270


>12_02_0364 -
           18020249-18020737,18021075-18021502,18021563-18021649,
           18022059-18022192,18023051-18023053,18023129-18023187,
           18023429-18023887
          Length = 552

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 1/62 (1%)
 Frame = -2

Query: 184 IQLILTGFLVLPLLFSIPTFRLGFTNRCHGLTGGARRRQTC*GVF**TTP-VWSLYLL*S 8
           + + L+ FL       +   R GF+ +C+  T G   R    G+   T    W LY L  
Sbjct: 135 LAISLSFFLSFSFRCELMQMRCGFSEKCNSFTFGFTARMRSWGIISLTVAYFWQLYTLWI 194

Query: 7   LV 2
           LV
Sbjct: 195 LV 196


>04_04_1135 +
           31140032-31140043,31140552-31140592,31140680-31140780,
           31141113-31141419,31141565-31141661
          Length = 185

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 215 NFLRFHVPYLNSVNFNGFSRVTFAFFYP 132
           N+L F   Y   VN  GF    F+FF+P
Sbjct: 90  NYLHFVKKYQRQVNNYGFYLCFFSFFFP 117


>02_05_0548 +
           29896648-29896701,29896818-29897021,29897451-29897708,
           29897821-29898036,29898130-29898285,29898396-29898707,
           29898795-29898882,29899055-29899203,29899390-29899722
          Length = 589

 Score = 26.6 bits (56), Expect = 8.2
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +2

Query: 26  RPNGGSSSKYPSTRLATPRTASQPVTT 106
           +PNGG+S+  PS RL+T    ++  +T
Sbjct: 516 KPNGGASNGTPSRRLSTGNQLNESKST 542


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,120,761
Number of Sequences: 37544
Number of extensions: 203967
Number of successful extensions: 436
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 427
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)