Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0003_D24
         (422 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY051864-1|AAK93288.1| 1304|Drosophila melanogaster LD36006p pro...    29   1.9  
AE014297-267|AAF52014.2| 1304|Drosophila melanogaster CG2519-PA,...    29   1.9  
AE014297-266|AAS65097.1| 1280|Drosophila melanogaster CG2519-PB,...    29   1.9  

>AY051864-1|AAK93288.1| 1304|Drosophila melanogaster LD36006p protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 209  LRFHVPYLNSVNFNGFSRVTFAFFYP---DVSAGFHQPLSRA 93
            ++ H+P+L    FN  SR+T  F  P   D+S G   P  RA
Sbjct: 1059 VQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA 1100


>AE014297-267|AAF52014.2| 1304|Drosophila melanogaster CG2519-PA,
            isoform A protein.
          Length = 1304

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 209  LRFHVPYLNSVNFNGFSRVTFAFFYP---DVSAGFHQPLSRA 93
            ++ H+P+L    FN  SR+T  F  P   D+S G   P  RA
Sbjct: 1059 VQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA 1100


>AE014297-266|AAS65097.1| 1280|Drosophila melanogaster CG2519-PB,
            isoform B protein.
          Length = 1280

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -1

Query: 209  LRFHVPYLNSVNFNGFSRVTFAFFYP---DVSAGFHQPLSRA 93
            ++ H+P+L    FN  SR+T  F  P   D+S G   P  RA
Sbjct: 1035 VQVHLPFLEVTAFNPRSRITLTFRKPEKRDMSVGLTTPRVRA 1076


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,845,508
Number of Sequences: 53049
Number of extensions: 362746
Number of successful extensions: 924
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 892
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)